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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCATCCTCCATGCAATTTCTCTCCTTGCCCCTGTTATGGGCCCAGAAATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgttgagttctcaagcttggttttggaagatgtctctttccctcccccaccttttttttttcttcttttcaaagcttggactgctggcctgaaagttaaatttcacag

Basic information

species Vitis vinifera
transcript Vv17s0000g03870.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 5'ss of exon 10
TGACCATCCTCCATGCAATTTCTCTCCTTGCCCCTGTTATGGGCCCAGAAATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgttgagttctcaagcttggttttggaagatgtctctttccctcccccaccttttttttttcttc-ttttcaaagcttggactgctggcctgaaagtta-aatttcacag----
||||  | ||   ||| |||||||| ||||| || ||  | ||  | |||   || |||  || | |  |||| |||||||| |||||||||||||||||||    | |||   |   ||    |  |       |||      |   || |  ||  ||  | ||   |   |||||  | ||||      | ||        |   ||| |   |    
TGACGGTACTTGTTGCGATTTCTCTTCTTGCTCCAGTAGTTGGTTCCGAAGCCACTTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCAAAAGACAGgtaccttagtttgctctccatatgtaatggaacttgattatcagtcaactgcaacagattggtattaggtaggttttcggatcttgtgtaattagctaattctctgtgattgcgatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877536|gb|DT026591.1|DT026591
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|349825185|gb|FQ415732.1|FQ415732
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|352769560|gb|FQ468488.1|FQ468488
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|352776768|gb|FQ472655.1|FQ472655
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|27584295|gb|CB006990.1|CB006990
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|352763870|gb|FQ465320.1|FQ465320
EST:     ATTACATGCTCGAAACTTCTGCCGGTGGTCATTAATGCAGCAAAAGACGG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110414406|gb|EC980237.1|EC980237
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|71880317|gb|DT029372.1|DT029372
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|30134721|gb|CB920059.1|CB920059
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|352787200|gb|FQ477820.1|FQ477820
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|22012824|gb|BQ797858.1|BQ797858
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|33404973|gb|CF210600.1|CF210600
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|32246186|gb|CD712005.1|CD712005
EST:     GTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: GTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110691608|gb|EE069902.1|EE069902
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110399866|gb|EC966397.1|EC966397
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|33405058|gb|CF210685.1|CF210685
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110429193|gb|EC995682.1|EC995682
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|22012767|gb|BQ797801.1|BQ797801
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110697249|gb|EE074074.1|EE074074
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|351031302|gb|FQ445327.1|FQ445327
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110428387|gb|EC994857.1|EC994857
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|30300336|gb|CB977130.1|CB977130
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110388878|gb|EC953676.1|EC953676
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110411876|gb|EC977604.1|EC977604
EST:     ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: ATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
EST: gi|110420001|gb|EC986261.1|EC986261
EST:     CGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAG                         GGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC
genomic: CGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGgtgaagttgt ... aatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCC