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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTTTGTCAAAAATTGGTGTAAGATTTGACAAACTCATAACAGATGGGGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGgtaatgtttactttgtcattgacttctccagactttatatgttgggaattatactatttattctgtgattctatatcatattattaaggtctttttctccctccctccctctctatag

Basic information

species Vitis vinifera
transcript Vv17s0000g01550.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G03270.2 (Glycine max), 5'ss of exon 8
AATCCTTTGTCAAAAATTGGTGTAAGATTTGACAAACTCATAACAGATGGGGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGgtaatgt-ttactt-tgtcattgacttctccagactttatatgttgggaattatactatttattctgtgattctatatcatattattaaggtctttttctccctccctccctctctatag
||||| ||||| ||||||||||| |||||||| |||| |||| | ||||| ||||| ||||| |||  ||| |||   ||| | ||||| ||||||||||||||||| |||||| | | ||  |  | |      |||| || ||      |||| |||| ||  | |||| |||||| || || |  ||   | | |||  ||   |  || | |  ||
AATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGgtaatgtgttacttctctaatacaacttttatatttttagatatt-----ctatattatt-atattttgat-ctatat-atcttttatagtcttgtatcttactatttttctgtttccag

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 12
AATCCTTTGTCAAAAATTGGTGTAAGATTTGACAAACTCATAACAGATGGGGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGgtaatgtttactttgtc-attgacttctccagactttatatgttgggaattata-ctatttattctgtgattctatatcatattattaaggtctttttctccctccctccctctctatag
||||| |||||||| ||||| ||||||||||| |||| |||| | ||||| ||||| ||||| ||| | || |||   ||| | ||||| ||||||||||||||||     | |||| | | | || ||||   |||| || ||   | |  || |||   | | | |  || |   | || ||      |||| ||||||  |||              
AATCCCTTGTCAAAGATTGGCGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTTTGTGTGAGGGTGGTCAAGGATTTTTCTGCAATGgtaatgccctatctgtctaataaattatcca---tttagatatttatattcttatctacaaactttatctttgtccttgatcttgaacttgtctgtttctctttccag------------

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 10
AATCCTTTGTCAAAAATTGGTGTAAGATTTGACAAACTCATAACAGATGGGGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGgtaatgtttactttgtcattgacttctccagactttatatgttgggaattatactat-ttattctgtgattctatatcatattattaaggtctttttctccctccctccctctctatag
||||| ||||| ||||||||||| |||||||| |||| |||| | ||||| ||||| ||||| |||  ||| |||   ||| | ||||| ||||||||||||||||  |   || ||  |||    | |||| ||||||| ||  ||  ||| |||| ||||| | |  |  | ||| ||||| |  ||   | | |||  ||   |  || | |  ||
AATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGgtaatgcattacttctc--tga----tacagattttatatttttaga--tatgctatattattatattttgatctat-atattttatagtcttgtatcttactatttttctgtttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185165|gb|CF604518.1|CF604518
EST:     GGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATG                         TTAATGATCTTCGTTTGGAAAACACGGGTGTGGAAGATCTGGACAAGTTAC
genomic: GGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGgtaatgttta ... ctctctatagTTAATGATCTTCGTTTGGAAAACACGGGTGTGGAAGATCTGGACAAGTTAC