1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGTGACAGTTGCTTTTCCAGCTACTCCACTTCTTTTGGCCAGGGCACGGATCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttttatctgcctatttggaatttatatttcttgtgtttcctccattaatatattttgcccccgttctctggccctagtcccctacactgatga...
species | Vitis vinifera |
transcript | Vv17s0000g00500.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCCATAA-GTATTTCCCTGCTGAEST: gi|71866164|gb|DT015219.1|DT015219
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCC-ATAAAGTATTTCCCTGCTGA
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATEST: gi|110360549|gb|EC923744.1|EC923744
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTAT
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|34542727|gb|CF510959.1|CF510959
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|22015490|gb|BQ800524.1|BQ800524
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|110421496|gb|EC987793.1|EC987793
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|34416104|gb|CF414858.1|CF414858
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|45368189|gb|CK906548.1|CK906548
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|110385601|gb|EC950143.1|EC950143
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|30124998|gb|CB910337.1|CB910337
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|110366510|gb|EC930420.1|EC930420
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|34320121|gb|CF372875.1|CF372875
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|110697624|gb|EE074785.1|EE074785
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAGEST: gi|30255672|gb|CB971804.1|CB971804
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
EST: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAG GTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
genomic: TCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttt ... tttttgtcagGTTATCAGCCGAGTTGGTGACCTAGTGGCCATAAAGTATTTCCCTGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGACAGTTGCTTTTCCAGCTACTCCACTTCTTTTGGCCAGGGCACGGATCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAGGCTTAGAGgttgttgttttatctgcctatttggaatttatatttcttgtgtttcctccattaatatattttgcccccgttctctggccctagtcccctacactgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctac