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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g00240.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 12
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaat--tctgttttgcag
||| || ||||| |||||||| ||||| ||||||||| |||||  ||| |||||||||||||||||  | |||||||||||||| || |   |   ||   | |  || |  |  |      |  | ||    |  || |      | ||   || |  |    | | |  |   ||  ||| |||
GTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGACTTATGATTTTATTTACCTACCAATTGACTTCAAGgtgatctagatttatttagtatgcaactaat----acatcatatttgttcagatagtcttgcctaatcgaattactgaatgggatgtgtcctacttttcag

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 12
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagta----------aatcttgcatggattgaatttctttgggga-agaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag
||| || ||||| |||||||| || || |||||||||  ||| || ||||||||||||||||| ||  ||||||||||||| || || |||           | |||||  | |     | ||||||      |     |    | | || |       | |  || |   | ||    ||  ||  |||| |||
GTACACATCAAAGATGCTTCTGGCAGCTATTGATGAAAGTCACCGGGGAACTTATGATTTTATCTACCTGCCAATTGACTTTAAGgtgagtggtctggtattagtcttggttagcagatagttctttaattttacctgcttctttgttacttgcatgtttgttggactaaacatta-ataatctccatttt-cag

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag
|||||| || || |||||  | ||||| |||||||||  ||||   || ||||||||||||||||| ||||||||||| || || |||  |  |  ||  |   ||    ||   || |   |||  |          ||| |    | ||  |||    ||  ||   |              
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaattta-actcataaccttgtattagttgagactacttgtctgctcatgttactaaatgagatcaatctccttttcag-------------

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 8
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaat-cttgcatggattgaat--ttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag
|||||||||||| |||||||||| ||| || ||||| ||   ||||||||||||||||||| | |||||||||||||| ||||| | |||||  |  ||| |     |   |  ||  ||    |   |||| |  ||   ||||   |  | ||| | ||    || | |||||  |    |||||
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtatttatttggacttgctagttgattgattctttacttaaatgaagta-atcataaatatgtttctaagtcaa--ttctacaaatggt----tgcag

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 10
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatt-tctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag
|||||||||||| |||||||||| ||| || ||||| ||   ||||||||||||||||||| | |||||||||||||| ||||| | |||||    ||   |||| |   |  |   | |       | | | ||    ||  |  | || | |   |                           
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagta---tttatttggacttgctagttgcttgattctttacttaaatgaagcaattataaatgtgtttctaag------------------------

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 10
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag
|||||||||||| |||||||||| ||| || ||||| ||   ||||||||||||||||||| | |||||||||||||| ||||| | |||||    ||   |||| |    |  ||    ||       |  | ||||  ||  || | || || |||                          
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTgtatttgccaattgatttcaaggcaagta---tttatttggacttg-ctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaag----------------------

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 12
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcc-tttttgcaaattctgttttgcag
|||||||||||| ||||||||||||||||| || || ||   |  |||||||||||||||| | ||||| || ||||| ||||| |||||||  ||| |      |    |||| ||  |  |  |||||| | ||   || |    |  | |  |   |     |||||               
GTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGgtaagtatttctggttgatttattctttccttttgagaagaaatcataaat---atgtttctaattttagtctacaacgattgcag--------------

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaat-ca--catatgacatatgcacatatctgattcgcctttt-tgcaaattctgt---tttgcag
||||||||| || ||||| || ||||| ||||||||  |   |  |||||| ||||||||| |||||||||||||||||||||| ||| | |   ||   |    ||   |    |   |||    ||| ||  | |||  | || |    | |||   |||   |   || |  |||  |   |||||||
GTATACTTCTAAGATGCTCCTAGCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATTGACTTCAAGgtatgcaggcctcttacctgttttttcatctaatggagtctaatgcagccttatagcttagggtattttctacatcgatataaatgaaccttccttctatttgcag

upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G61960.2 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag---------------------
||| ||||| || ||||||||  |||| ||||| || |||  |  |||||||||||||||  |||||||||||||||||||||| | ||| |    |   |          || |||    |||||| ||  ||    || |  ||| ||   | || |   ||||||||   |  | |                          
GTACACTTCGAAGATGCTTCTATCTGCTATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATTGACTTCAAGgcaagcaggcgtcctac--------cttttttatataagaaagtcttattaagcaga--cacgtagaggttttggtattttgcaataacgatctaatctaatcttaccctgtcatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404602|gb|CF210229.1|CF210229
EST:     AACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAA                         AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCAT
genomic: AACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaat ... tgttttgcagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCAT
EST: gi|110376881|gb|EC941957.1|EC941957
EST:     AACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAA                         AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCAT
genomic: AACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaat ... tgttttgcagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCAT
EST: gi|161716528|gb|FC065225.1|FC065225
EST:     AACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAA                         AACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCAT
genomic: AACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaat ... tgttttgcagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCAT