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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatattgtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag

Basic information

species Vitis vinifera
transcript Vv16s0050g01840.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g43480.2 (Oryza sativa), 5'ss of exon 10
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatattgtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||||||  || | ||  |    ||| |  |  | || ||||||||||| |||||||| |||||||||||||| ||| | || ||| | ||||| ||||||||  |||   |  |||||   |   |     | ||  ||    |||   | |   | |  ||| |  | | || | ||   ||   |||   |                                           
ATGGACTCTTGTCTAAGTCCAACGAAAGGATATTAGTCCTTGCTGCAACGAACAGGCCCTTTGACCTTGATGATGCGGTGATAAGGAGATTTGAGCACAGgtatgtttcgtttatgtgt---atctaa----acttctatttgattaaattcagcttctctagatgagtttttttatgagtcatttgtgttaaatag----------------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 11
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatattgtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||| ||  || |||   | |   |  || | || ||||||||||| ||||||||||| ||||| ||||||||||| |||||| |  |||| || |  ||||   | |   |  |     | ||| || | | |||    | |    |  |         |||  |  |    |     || |                                                      
ATGGCCTCTTGTCAAGGTCGGACCAGAGAATTCTTGTTCTTGCTGCGACCAACAGGCCTTTTGATCTTGATGAGGCTATTATCCGTAGGTTCGAGCGAAGgtttgtatattttctccaagatact-agtaacgtttatg-catccctcagtttgttccctgagctgtgtcctcttcctttaaacag---------------------------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 11
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatattgtgttacactcagcatcattttcatcgtttta-ctctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||| ||  || ||| | | | | |  || | || |||||||||||||||||| |||| || || ||||||||||| || ||| |  |||| || |  ||||    ||| |||||   | || |  |     | |  |||   |  | | || ||  | |       | | | ||     ||  | |  |                                                
ATGGCCTCTTGTCAAGACCGGATCAGAGAATTCTTGTTCTTGCTGCAACCAACCGGCCTTTCGATCTTGATGAGGCTATAATCCGTAGGTTCGAGCGAAGgt----ttgtatatt---tcacccaaaatgctagtaacatttatgcatccctcaatttgttccctgagctgtgttctctttaattaacag------------------------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G37380.1 (Glycine max), 5'ss of exon 10
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatatt-gtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
||||| || |||||||| ||||||| ||| | || |||||||||||||||||||||||||||||||||||||| || ||||| || |||||||| | ||||||      ||  || || |||   |  |||| || |||      ||||| ||   || |  || ||  ||||||     ||   |||    |||| ||  ||                                   
ATGGAATATTGACAAAACCTGGTGAGCGAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGgtaagaccacacctttgtcttatggttggcatgatcttctgttgattact-tgtgtctgttcagcagc-tatattttctttattagaaca-atcacaatcatt-----------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G30360.1 (Glycine max), 5'ss of exon 10
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgca-tattgtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| ||||| || |   ||||||| | || |||||||| ||||||||||||||||||||||||||||| || || || || |||||||| | ||||||      || | |||| |||   |  |||  || |||      ||||| ||   || |  |  ||  ||||||     ||   |||     ||| ||  ||                                   
ATGGGCTATTGACAGAACCCAATGAACGAATTCTGGTTCTTGCCGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATAAGACGGTTTGAGCGCAGgtaagaccacacttttgtcttatggttggcaggatcttctgttgattact-tgcttctgttcaacagt-tatattttctttattagaaca-accacaatcatt-----------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G29290.1 (Glycine max), 5'ss of exon 3
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatatt-gtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| | |||  | ||  ||| | | |  | |||||||| ||||||||||||||||||||||||||||| || || || || ||||||||    ||||||     ||  || || |||   |  |||| ||  |  |  |  | || |  ||| |   | |    |  | | |  | | | || ||  |  |                                          
ATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccacacctttgtcttattgtttgcatgatcat-gtgttgcttctattcagcaaca-acatttttgcaatcagaacaaa-gactgcatttctccatca-----------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G29250.1 (Glycine max), 5'ss of exon 1
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatatt-gtgttacactcagcatcattttcatcgttttactctgaagctatggagaaggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| | |||  | ||  ||| | | |  | |||||||||||||||||||||| ||||||||||||||| || || || || ||||||||    ||||||     ||  || || |||   |  |||| ||  |    || || ||   |   |  | |  |  || |    ||     |  ||     |||    |  | |                                
ATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGGCTATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccacacctttgtcttattgtttgcatgatcat----gtgttgcttcta--ttcagcaacaacattttcgcaatcagaacaaagactgcacttctccatca--------------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 11
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgcatattgtgttacactcagcatcattttcatcgttttactctgaagctatggaga-aggatatattaaagatagatgaatgtgtcaccatgctttgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| | ||   | ||  ||| | | |  | ||||| || ||||||||||||||||||||||||||||| || || || || |||||||| | |||||||   | ||  || |||   | |        ||| ||   |  |    ||   ||||  ||  |  | || ||    ||  | || ||  |   |   || | | ||                             
ATGGGCTATTAACTGGACCTAATGAGCAAATTTTGGTTCTCGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGgtaggactacacctt-tgtcttatt-------gtttccaagatcatgtgttgcttctattcagccacaacatttttgtcatcaaagactgcattttct--ctatcattat----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254915778|gb|GR905209.1|GR905209
EST:     AACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAG                         AATTATGGTTGGTCTACCATCTGTGGAGAGCAGAGTGATGATCCTGAAGAC
genomic: AACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGgtagatttgc ... tgatgaacagAATTATGGTTGGTCTACCATCTGTGGAGAGCAGAGAGATGATCCTGAAGAC