Sequence
atgc intronic sequence ATGC exonic sequenceGATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtgaattgattaagaatctgctgttgtgttgactcttgggattaatcgttgaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g50750.3 (Oryza sativa), 5'ss of exon 12
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAG---CAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgta------cttctactgacatcaatggtgaattg----attaa--gaatctgc-tgttgtgttgactcttgggattaatcgttga--aacag
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---GATCTTAAGGACACTATTGTCAAAAGAGAAGGTTGCTGAAGATATTGATTACAAGGAGCTTGCAACAATGACCGAAGGATACAGTGGAAGCGACCTTAAGgtttgtggattgctttgaacctgagttcgtagtaagcttctgtgttgatagaatctgaatgtatgactgaaactttgtgcctttttttgggtaccag
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 12
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCA---GAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatg-------gtgaattgattaagaatct-gctgttgtgttgactcttgggattaatcgttgaaacag-------------------------------------------------------------------------------
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---CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAGGGCTGGACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagcatga--aacatgaatgcgcacacatgcccccatgaaaaacaaaggcaccatgctcaacaccgatttatttttctgagaatacgcaagatagttgtgtatctctgtattaagagctaaagtagagatcaattatgctcgacactgaattcttctttaacag
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 12
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGAT---CTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtgaattgattaagaatctgctgttgtgttgactcttg--ggattaatcgttgaaacag--------------------------------------
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---CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAAGGCTGAACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtaac---atgaactctcgatttattttttctgagaatgtgtaagagagctgtgtatcgttgtattgagaactaaagtagagatcaattctgctcgatcctgaattcttctttaacag
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G30360.1 (Glycine max), 5'ss of exon 11
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtgaattgattaagaatctgctgttgtgttgactcttgggattaatcgttg-aaacag
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AATGATCTTGAAAACTATCCTAGCTAAGGAAAAATATGAAAATATAGACTTTAAAGAGCTTTCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGgttcaccttgttggttattctaattccttacttct----agtttgtggtgatgat--ctattgacattaatttctgtaaacag
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 12
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgac--atcaatggtgaattgattaagaatctgctgttgtgttgactcttgggattaatcgttgaaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAATTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTAAAGgtgaattttggtggcgatttactggttttattttttttgggaaaataaattgatgttaatttctgtgaacag------------
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G37380.1 (Glycine max), 5'ss of exon 11
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtgaattgattaagaatctgctgttgtgttgactcttgggattaatcgttg-aaacag
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AATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAACATATAGACTTTAATGAGCTTTCAACCATTACAGAAGGATATACTGGAAGTGATCTTAAGgttcaccttgttggttattctgattccttacttct----agtttgtggtgatgat--ctattgacattaatttctgtaaacag
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G29290.1 (Glycine max), 5'ss of exon 4
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgac--atcaatggtgaattgattaagaatctgctgttgtgttgactcttgggattaatcgttgaaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGgtgaattttgggggcgatttactggttttattttttttgggaaaataaattgatgttaatttctgtgaacag------------
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G29250.1 (Glycine max), 5'ss of exon 2
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtgaattgatt--aagaatctgctgttgtgttgactcttgggattaatcgttgaaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGgtgaattttggtggcgagttactcgatttatttttttggggaaaataaattgatgttaatttctgtgaacag------------
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 12
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtg--aattgattaagaatctgctgttg-tgttgactcttgggattaatcgttgaaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAGAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGCGATCTTAAGgtgaattttggtggtgat-ttactggttttatttttttggggaaaatctgttgatgttaatttctgtgaacag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404861|gb|CF210488.1|CF210488EST: TTAAGGAGCTTGCAACCATGACAGAAGGTTATTCTGGAAGTGATCTTAAG AATTTGTGCATGACAGCAGCTTATCGTCCTGTAAAGGAGCTACTACAACAA
genomic: TTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtactt ... gttgaaacagAATTTGTGCATGACAGCAGCTTATCGTCCTGTAAAGGAGCTACTACAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctactgacatcaatggtgaattgattaagaatctgctgttgtgttgactcttgggattaatcgttgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG