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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGACCCCCATTGATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGgttaaaaattctgctttcaatctctagatatttaatgaattccatttaaccatatgaacaggtgcatgcatgcattggagcatacatacatatatagcac...

Basic information

species Vitis vinifera
transcript Vv16s0039g02260.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G01410.1 (Glycine max), 5'ss of exon 2
GCTTTGGACCCCCATTGATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGgttaaaaattctgctttcaatctcta-gatatttaatgaattccatttaaccatatgaac----aggtgcatgcatgcattggagcatacatacatatatagcac
||||||||| || || |||||||||||||||||||||||  | ||||||||||||||||||||||||||||    |||   ||    | |  |  | ||  ||| ||    || |     |   |      ||     ||| ||   | |     || |   || || ||| 
GCTTTGGACTCCAATAGATGGTGAATTTGATGATTACATCATTAATCCAAAGCCTAGTGGCTATCAGgttaggctttccttttcattttttcacaacataaaattaaaatgatcttgttcttctagtcttgagaattgtgcttgtgattgtattaacgtgtttaaattgcag

upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA01G43940.1 (Glycine max), 5'ss of exon 2
GCTTTGGACCCCCATTGATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGgttaaaaattc-tgctttcaatctctagatatttaatgaattccat-ttaaccatatgaacaggtgcat-gcatgcattggagcatacatacatatatagcac--
||||||||| || || ||||||||||||||||| |||||  | ||||| |||||||||||||||||||||     ||| || |   | | ||  || |   ||| ||    || ||   | | |   |  | | || |    | |    | ||  ||   | || |   |  
GCTTTGGACTCCAATAGATGGTGAATTTGATGACTACATCATTAATCCGAAGCCTAGTGGCTATCAGgtttggctttcctgttcatattttcatgaaacaaaattaaaatgatcttgttcttctagtcttgagaattgtgctcgtgattgtattaatgtgtttaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71866418|gb|DT015473.1|DT015473
EST:     ATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAG                         TCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAA
genomic: ATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGgttaaaaatt ... tcttttgcagTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAA