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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTTgtaagaactgtcaatcacttttgactctattattttgtttttctgtgcatgtatttcatgggaatataatttttttttttcag

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 13
GTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTTgtaagaactgtcaatcacttttgactctattat--tttgtttttctgtgcatgtatttcatgggaatataatttttttttttcag
|||||| ||||| |||| ||||||||||||||| || || |||||||||||||||||||  || |||||  ||| ||   |      || ||||  | |  | ||  | |  |  | | | |||| | ||  |  ||| ||    || |||||||||
GTACCTTCATGGAAACATGCTTACTGGACCAATACCTCCCGAACTTGGCAATATGTCAAGACTAAGCTACCTgtgag--ttaatctccaattttagcgccctcatggtctcctgatttcttcatgaagttgctaagaagat----ttgttttttcag

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G27950.1 (Glycine max), 5'ss of exon 12
GTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTTgtaagaactgtcaatcacttttgactcta-ttattttgtttttctgtgcatgtatttcatgggaatataatttttttttttcag
|||||| ||||| |||| |||||||||| |||| || || |||||||||||||||||||  || |||||  ||| ||     ||    | ||| |  |||  ||  | |  |  | | | |||| | ||  |  ||| ||    || ||||| |||
GTACCTTCATGGAAACATGCTTACTGGAACAATACCTCCCGAACTTGGCAATATGTCAAGACTAAGCTACCTgtgagt-tgatctccaattttagtgtctgcttgatctcctgctttcttcatgaagttgctaagaagat----ttatttttacag

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G07180.1 (Arabidopsis thaliana), 5'ss of exon 13
GTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTTgtaagaactgtcaatcacttttgactctattattt-tgtttttctgtgcatgtatttcatgggaatataatttttttttttcag
||| ||||||||||||||||| ||||||| ||| ||||| || || ||||||||||||   || ||||||||||||||    |  |  ||||   |||| | ||| | |  || ||  | | || || | ||| |  | ||     | |||  |||
GTATCTCCATGGCAACAAGCTCACTGGACAAATCCCACCCGAGCTAGGCAATATGTCACGACTCAGCTATTTgtaaga----ttgagaacttgaaactccaatatctgttcttctcaatacttg-atcttatgagggttta----ctctttcgcag