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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCCTGCTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaatacaccatttccttataatcctcttctcttaattggtgattcttaccttggtatcacatgtcaaacttgtcacag

Basic information

species Vitis vinifera
transcript Vv15s0048g02010.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G08320.1 (Glycine max), 5'ss of exon 12
GAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCCTGCTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaatacaccatttccttataatcctcttctcttaattggtgattcttaccttggtatcacatgtcaaacttgtcacag
|  || ||||| |||| ||||||  ||||| |  | ||  ||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||| ||||||||||| | ||      || | || |  |    |  |   | ||  ||  |    | ||| |  ||  |   |||    |  |||
GCTGCATGTGCGCATCCCTTCTTCAATGATCTGCGGGACCCAAATGCATGCTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgatttgaacttacattttggttaagtgatac-atttcttgccttaggcattgct--catgtaagaaaacaat-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30328496|gb|CD011758.1|CD011758
EST:     CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG                         AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: gi|22009072|gb|BQ794106.1|BQ794106
EST:     CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG                         AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: gi|110382179|gb|EC938698.1|EC938698
EST:     CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG                         AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: gi|37189535|gb|CF608884.1|CF608884
EST:     CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG                         AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
EST: gi|110370204|gb|EC929099.1|EC929099
EST:     CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAG                         AGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG
genomic: CTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaat ... cttgtcacagAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATG