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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAAGCGAGCCTTGAAAGTTGCGAAGAGAAAGTTAGGCACACACAAGAGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaataggggcatatatgccctccgcctcagtgttataatgaaagctcaccttagtaccatttgagtagctttctgaaaattaattaaagaaaata...

Basic information

species Vitis vinifera
transcript Vv15s0046g02690.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245225|gb|CD711044.1|CD711044
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110400643|gb|EC967213.1|EC967213
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110707201|gb|EE083396.1|EE083396
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110691511|gb|EE069693.1|EE069693
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110709894|gb|EE085753.1|EE085753
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110702094|gb|EE080418.1|EE080418
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|37189320|gb|CF608669.1|CF608669
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110374107|gb|EC938650.1|EC938650
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110728017|gb|EE103215.1|EE103215
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110411867|gb|EC977594.1|EC977594
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110706280|gb|EE081670.1|EE081670
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110385264|gb|EC949772.1|EC949772
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110702513|gb|EE081309.1|EE081309
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110729633|gb|EE105789.1|EE105789
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110400582|gb|EC967148.1|EC967148
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
EST: gi|110726490|gb|EE102315.1|EE102315
EST:     AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAG                         GTCTGGTGGAGTTGGAGAGAANAAGAAGTGAGCTGTTCCCGTCTTCTCTGA
genomic: AGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaata ... ttctgtccagGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGAGCTGTTCCCGTCTTCTCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGACAAGCGAGCCTTGAAAGTTGCGAAGAGAAAGTTAGGCACACACAAGAGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGgtaattaataggggcatatatgccctccgcctcagtgttataatgaaagctcaccttagtaccatttgagtagctttctgaaaattaattaaagaaaata

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa