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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatcttaatttgaatattgtaccatctgcag

Basic information

species Vitis vinifera
transcript Vv15s0046g01620.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 7
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatata------gcaattgaggggtgtatacaggcaagtttagcccatt-tttcatctttcaaatcttaatttgaatattgtac--catctgcag
|| || | ||||  ||||||   ||||||||  | |||||||| ||||| ||||||| |||||| ||  |||| ||||| || ||||||||||||||||||| |    |||       | |||| |   ||  | | ||     || ||   |   | |||      || | ||  | |  | |||  |   ||   | | 
ATACCCTGCCACTAATGCCTAATGATGGAGACACTTGGTCTGTGATGCAAAGCTGGGTTTTGCCTACGAGATCATTCCTGGAATTTGTAATGTTCTCAAGgtgcacattatctcttttggaattcaatagtcaacatagcagtattaagtggaagatgtcactagctaactgttggtgtatacatttcaaagcacaagta-

upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G053047_T02 (Zea mays), 5'ss of exon 13
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtata------caggcaagt-ttagcccatttttcatctttcaaatcttaatttgaatattgtaccatctgcag--
|| |  |   || |||||||   ||||||||  | |||||||| ||||| || |||| |||||| || || || |||||||| ||||| |||||||||||||| ||| | | |   ||  |     ||        || |||||| |||   ||| | | |      |||   |   |  | |  | ||  |||||  |  
ATACTCTGTTACATATGCCTAATGATGGAGACACGTGGTCTGTGATGCAAAGTTGGGTTTTGCCTACACGGTCATTCCTAGAATTTGTTATGTTCTCAAGgta-tgggttttgtttttaggaatcttactgacaatcaagcaagtgttattacatgtataactagataaaatatgtatgcactggtttattatctgatgtt

upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 12
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatct---taatttgaatattgtaccatctgcag--
|||| || || || |||||||||||||| ||  ||||||||||||||||||| |||||| |||| ||  |||| ||  | ||||||||||||||||| |||||    |  |||   |      ||  | | | | || ||   | | | |  | | ||| | |  |   ||| |    ||   |||||| ||     
ATTCTTTGCCTCCCATGCCTGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTCTGCCTACGAGATCGTTTATGGAGTTTGTAATGTTCTCTAGgta---aacttagt--tcattttgtaaa-ataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcag

upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 11
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatct---taatttgaatattgtaccatctgcag--
|||| || || || ||||| |||||||| ||  ||||||||||||||||||| |||||| |||| ||  |||||||  | ||||||||||||||||| |||||     ||     |||      |||   |    ||  ||   |  || |   |  || | |  |   ||| |     |   |||||| ||     
ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgta--aactaagttcattt-----tgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcag

upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatcttaatttgaatattgtaccatctgcag----
| || || ||||| ||||| |  ||||| ||| |||||||||| |||||||||||||| ||||||||  |||||||| |||||||||| |||||||||||||||| | | || ||  | |    |  ||     ||   ||||||  |||           | |  | |   |  | || | |||||||       
ACTCATTGCCACCAATGCCCGAGGATGGGGATACATGGTCTGTGATGCAGAGCTGGGCATTGCCAACAAGATCCTTCTTAGAGTTTGTCATGTTCTCAAGgtacttgtt-taccacattacccattgattgtctcagtcttagcctctttggagaaagaagagtgcttaagagtgtgttttcccatctgtttgtag