Sequence
atgc intronic sequence ATGC exonic sequenceGATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtctaaactagaccaatagtaatagtgtagccatcattacttcaggtatgcagttagtttagtcccttcgattggaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os09g28610.1 (Oryza sativa), 5'ss of exon 12
GATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtctaaactagaccaatagtaatagtgtagccatcattacttcaggtatgcagttagtttagtcc-cttcgattggaaaa--
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GATTCTTTTATTGGATTCTTATTTTACTGTTGTTATCTTCCATGGGATAACGATTGCACAGTGGCGAAATGCTGGTTACCAAGATCAACAAGACCACGAGgtaatagcgtgtcaactatggctgtatggcagctcgattcttgtt-tgcagagattatttatcaaatactacatct--tatagtctgctttagtgagattatt
upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G063775_T02 (Zea mays), 5'ss of exon 2
GATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtct---aaactagaccaatagtaatagtgtagccatcattac-ttcaggtatgcagttag--tttagtcccttcgattggaaaa
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GATCCTTTTATTGGACTCTTATTTTACTGTTGTCATATTCCATGGGGTAACCATTGCGCAGTGGCGAAATGCTGGCTACCAAGATCAAGAAGGTCACGAGgtaacctgtcaatgcttcacagctttgtgatgttagccaactgaaatgccaaatttgcgcttacacatcattattcaaatacatttttaatattttgctt------
upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G09260.1 (Glycine max), 5'ss of exon 4
GATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtctaaactagaccaatagtaatagtgtagccatcattacttcaggtatgcagttagt---ttagtcccttcgattggaaaa--
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GATCCTGCTTTTGGATTCATTTTTCACTGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGgtattctttgaaaatgctatag-ctaatctcag--aatagttat--tctatttagttttgttctgaggtttttgttggagaattacagtatccaactaatagggt
upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 10
GATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtctaaactagaccaatagtaatagtgtagccatcattacttcaggtatgcagttagtttagtcc---cttcgattggaaaa--
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GATCCTGCTTTTGGATTCATTTTTCACAGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCAGAACATCAGgtattctt---tggaaatgctatagcaaatctgaaaatagttat--tctatttagttttgttccgaggtttttgttggagaactacaatatccaacttaaagggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110382345|gb|EC939227.1|EC939227EST: CTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAG GTGTTTGCCCAGTTGCTGCGGGCTCCACGAGATGATGCTGATGCAATAATT
genomic: CTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgt ... gtccttgcagGTGTTTGCCCAGTTGCTGCGGGCTCCACGAGATGATGCTGATGCAATAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCCTTCTTTTGGACTCTTATTTTACTGTTGTTGTATTTCATGGTGCAACTATTGCTCAGTGGCGAAATGCTGGATATCAGAATCAGCCTGAACATGAGgtaattttgtatggacatgtagtctaaactagaccaatagtaatagtgtagccatcattacttcaggtatgcagttagtttagtcccttcgattggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa