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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttactaaatataaattatatgattgatttcatacataaatctgatatttttttatttcattccttataattaattcttggatactgctaaataat...

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 12
ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttactaaatata-aattatatgattgatttca-tacataaatctgatatttttttatttcattccttataattaattcttggatactgctaaataat
|| || || || ||||| || ||||||||  | || ||  | ||||||||||| |||| || ||| || |||||||||||||| ||||||| |  ||||| ||   | ||  | |||  |   | ||  ||| |    ||||| | ||     || | | |  ||  | |||       | |  |||| 
ATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatctaaacatctgaatagcttattactacaaatatttaacttgtttatttgtgtaaaatgtttcctttg-ttcttccttttgggtggatttataa-

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 12
ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttactaaatataaattatatgattgatttc-atacataaatctgatatttttttatttcattccttataattaattcttggatactgctaaata-at--
|| || || || ||||| || ||||||||  | || ||  | ||||||||||| |||| || ||| || |||||||||||||| ||||||| |  ||||| ||    |  ||     ||| | | | |||  |   |  ||  ||| | | |    || | |||  |||||   |   | |  ||  ||  
ATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatctaaacat---ctgaatagcctattactacaaatattttacacgttcatttgtgtaaaatgtt-tcattggttctttcttttgggtggatttataa

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttactaaatataaattatatgattgatttcatacataaatctgatatttttttatttcattccttataatt-aattcttgg--atactgctaaataat----------------------------------------------------------
|| || || |||||||| |||||||| || || |||||| | ||||||||| ||||  | || || || |||||||||||||| |||||||   | | ||| |||| | | |||       ||||   |   ||| || ||||     | ||   | ||  || | ||||  |   |||||| |   | |                                                          
ATTACATACACCAGTGATTATTTCCAGGAACTGTATGATTTGGCAGTGGAGTTGATTCGGAGAGGTCATGCTTATGTTGATCATCAGgttg---aatcaatttaaaatttctga-------catatggattcctgttacttttaccaattatatgtcattctttagttctaagctgtactgcaagtcagtctggaactttatccacactaaaacttatcctatcgagtaattgtttttacacttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035456|gb|FQ463301.1|FQ463301
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351016500|gb|FQ423927.1|FQ423927
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351016499|gb|FQ423926.1|FQ423926
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351025032|gb|FQ433449.1|FQ433449
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351034412|gb|FQ463225.1|FQ463225
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351033348|gb|FQ446580.1|FQ446580
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351027650|gb|FQ446817.1|FQ446817
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351024489|gb|FQ426298.1|FQ426298
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|352790073|gb|FQ479683.1|FQ479683
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCGCCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351046338|gb|FQ448643.1|FQ448643
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351054204|gb|FQ450286.1|FQ450286
EST:     ATCTTGCAGTGGGGCTGATACGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351019825|gb|FQ439642.1|FQ439642
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351039502|gb|FQ461369.1|FQ461369
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACGCCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351026622|gb|FQ436275.1|FQ436275
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349833020|gb|FQ416398.1|FQ416398
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|352789985|gb|FQ479595.1|FQ479595
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351033263|gb|FQ462035.1|FQ462035
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351040162|gb|FQ425248.1|FQ425248
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351054398|gb|FQ450481.1|FQ450481
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351037106|gb|FQ456939.1|FQ456939
EST:     TCTTGCAGTGCG-GCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: TCTTGCAGTG-GAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349832664|gb|FQ422022.1|FQ422022
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351056659|gb|FQ443286.1|FQ443286
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351028040|gb|FQ425941.1|FQ425941
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351043435|gb|FQ451487.1|FQ451487
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351042076|gb|FQ456286.1|FQ456286
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351034920|gb|FQ458277.1|FQ458277
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351046877|gb|FQ454487.1|FQ454487
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351035498|gb|FQ463343.1|FQ463343
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351031204|gb|FQ445031.1|FQ445031
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351022167|gb|FQ438752.1|FQ438752
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351051825|gb|FQ455239.1|FQ455239
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349815577|gb|FQ400733.1|FQ400733
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351036533|gb|FQ457246.1|FQ457246
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351052468|gb|FQ452501.1|FQ452501
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349827622|gb|FQ422490.1|FQ422490
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351024264|gb|FQ423687.1|FQ423687
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351025469|gb|FQ435161.1|FQ435161
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGACGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351025913|gb|FQ427925.1|FQ427925
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351044016|gb|FQ431447.1|FQ431447
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349828962|gb|FQ419295.1|FQ419295
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|352798342|gb|FQ480367.1|FQ480367
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351016726|gb|FQ424153.1|FQ424153
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351026266|gb|FQ428278.1|FQ428278
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351014382|gb|FQ437384.1|FQ437384
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACC-TGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAG
EST: gi|349823406|gb|FQ423217.1|FQ423217
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351025836|gb|FQ427848.1|FQ427848
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349830206|gb|FQ420466.1|FQ420466
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351039874|gb|FQ464912.1|FQ464912
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|349819006|gb|FQ411701.1|FQ411701
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|161715288|gb|FC064876.1|FC064876
EST:     ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351036393|gb|FQ458768.1|FQ458768
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351042077|gb|FQ456287.1|FQ456287
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAGTAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
EST: gi|351037820|gb|FQ464261.1|FQ464261
EST:     ATCTTGCAGTGGGGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG                         ACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG
genomic: ATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttact ... ttgattgcagACACCTGAAGAGATAAAAGAATATAGGGAAAAGAAGATGAATAGTCCTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttactaaatataaattatatgattgatttcatacataaatctgatatttttttatttcattccttataattaattcttggatactgctaaataat

- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaataa