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GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatcagaccttttagtattttacttgatttcttttcacatgtttggtttatttacttgaatatcttctcaagttttcatatcaaacttaagttc...
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|351015046|gb|FQ444335.1|FQ444335
genomic: GATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATCCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTCAGAGGEST: gi|110365367|gb|EC928242.1|EC928242
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATCCGCATTCAATTTAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTCAGAGGEST: gi|110715492|gb|EE093605.1|EE093605
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|33405782|gb|CF211409.1|CF211409
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|110361886|gb|EC925389.1|EC925389
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATCCGCATTCAATTTAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTCAGAGGEST: gi|294967142|gb|GW840017.1|GW840017
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTEST: gi|110696408|gb|EE072500.1|EE072500
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTT
EST: GGCAGAAATCCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTCAGAGGEST: gi|110390234|gb|EC955134.1|EC955134
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GCAGAAATCCGCATTCAATTTAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTCAGAGGEST: gi|352763934|gb|FQ465384.1|FQ465384
genomic: GCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: TTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|56409520|gb|CX017772.1|CX017772
genomic: TTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|352781474|gb|FQ468318.1|FQ468318
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|110416304|gb|EC982275.1|EC982275
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGGEST: gi|110373098|gb|EC937308.1|EC937308
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
EST: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT GTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
genomic: GGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatc ... ctgtgtttagGTCAAAGGCAGGGGAGAAATGAATTTGTAATACGCCTCCAACCTTTAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGATgtatggcatcagaccttttagtattttacttgatttcttttcacatgtttggtttatttacttgaatatcttctcaagttttcatatcaaacttaagttc
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