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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAGCCAATCTATTTCCTGATCTAGCAAACCACAGAACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAGgtcagtctcatcaaaccctcaaaaattaaattaagtggtccctttttcatgaatatgattggactttacatcttgttgaaatttttgcag

Basic information

species Vitis vinifera
transcript Vv14s0171g00310.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545844|gb|CF514076.1|CF514076
EST:     ACTTTTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAG                         GTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
genomic: ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAGgtcagtctca ... atttttgcagGTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
EST: gi|30131113|gb|CB916452.1|CB916452
EST:     ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAG                         GTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
genomic: ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAGgtcagtctca ... atttttgcagGTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
EST: gi|30137480|gb|CB922818.1|CB922818
EST:     ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAG                         GTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
genomic: ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAGgtcagtctca ... atttttgcagGTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
EST: gi|30129363|gb|CB914702.1|CB914702
EST:     ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAG                         GTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA
genomic: ACTTCTTGGCCATACTGATTTTTACATCTCAACAGGGCAACATAAACTAGgtcagtctca ... atttttgcagGTACATCCAGGAAGCTGGGTACAGTCTAGAGCAACCAAGAAATATGGATAA