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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAGgtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacag

Basic information

species Vitis vinifera
transcript Vv14s0060g01680.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G316967_T01 (Zea mays), 5'ss of exon 12
ATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAGg--tgaaagggagttttcatg-agtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacag
||||| ||||||  |||  |||| ||||| ||||| ||  | |  ||||| || ||||||||||| || || ||||| ||||||||||| |||||||  ||| | |    ||  ||| |   ||  |    |   ||      | |   |  ||    || |  || | ||  |                
ATTGAGGCTCATTCTGGAGGTGTAAATGATATAGCATTCTCCCGACCAAATAAGCAACTTTGTGTGGTCACTTGTGGAGATGATAAACTAATAAAGgtatgagatgtgacttgtatggaaaattaataaactgttttacttggcttatctccttgaacttcattttttttatttag--------------

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G29090.1 (Glycine max), 5'ss of exon 13
ATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAGgtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacag
 ||||||||||||||||  |||| |||||| | || |||||||||||||| ||||| || ||| | || || ||||| ||||||||  ||||||||||  |    | | | | |  |   ||||||  | |     ||||  |  |||||||   |  |    ||||   |                
GTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGgttcagaaaaatctac-tctgcaatttttgaattatgcaaaaattatcattttttc---tgaagaaactcttgatag--------------

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA19G41840.2 (Glycine max), 5'ss of exon 12
ATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAGgtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacag
 ||||||| ||| ||||| | ||||||||| | || ||||||||||| || |||||||| ||| | || || ||||| ||||||||  ||||||||||| |      |  | ||  ||| |||| | |||     |||||  |          | | ||  |  ||| |   | | |     || ||
GTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGgtgcacaaatctacttatt-gtgattttggattatgc-ataaatagta---------tatctatttaatctgaagaagaaactcttaatag

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 13
ATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAGgtgaaagggagttttcatgagtgtt--ttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacag
 ||||||| ||| ||||| | ||||||||| |||| ||||||||||  || |||||||| ||| | || || ||||| ||||| ||  ||||||||||| |      |  |  ||| | |   || ||  ||||| ||| |||     | |||  | |  |    |||| | |                
GTTGATGCCCATATTGGTGGAGTTAATGACTTAGCATTTGCTCATCTGAATAAACAACTCTGTATTGTGACTTGTGGAGATGACAAGTTGATAAAGgtgcataaatctacttgtgattttggattatgcgtaaatggtatatc-----tattttgtctgaagaaactcttaatag--------------

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G38230.1 (Glycine max), 5'ss of exon 13
ATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAGgtgaaagggagttttcatgagtgttttttgtttaaattgtaaatccttcttttttcctttttacgttctctaagtgaaagaaatgaaacag
 ||||||||||||||||  |||| |||||| |  | |||||||||||||| |||||  | ||| | || || ||||| ||||||||  ||||||||||  |    |  |    |  |   ||||||  | |     || |  |  ||||||  | |  |    ||||   |                
GTTGATGCTCATGTTGGGGGTGTGAATGACTTGTCATTTGCTCATCCAAATAAACAGATGTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGgttcagaaaatctactctttgcaatttttgaattatgcaaaagttatcatttttttttctgaagaaactcttgatag--------------