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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTGAAAAGGAGGGATTTGAAGTAAGTGTTGCCAAGACTGGTTTTAAGGCTAACACAAAGGTCCTAGCCGAAAATGAAGGGGAGGGACTTGCTAAGgtgtatatacaactccttttattcctgttctattctctggtacatgatagtttctacttttcttttgttactggaataggtggtaagtagttttctcacctgttaaaaacacaaagtgtttttatgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g01330.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 12
AAAAGCTGAAAAGGAGGGATTTGAAGTAAGTGTTGCCAAGACTGGTTTTAAGGCTAACACAAAGGTCCTAGCCGAAAATGAAGGGGAGGGACTTGCTAAGgtgtatatacaact--------ccttttattcctgtt--ctattctctggtacatgatagtttctac------ttttcttttgttactggaataggtggtaagta--gttttctcacctg--ttaaaaacacaaagtgtttttatgcag------------------------
||||||||| || || ||||||||  |||||||||  |||||  | ||||||||||| ||||| |   | || ||||||||||| || |||||||||||||| || ||     |        ||  ||||| || |    | || |    | || | |  ||||||       | || | ||||  |   | | |    |  |||  | | |||  | ||  || |       |  |  |||      |                        
AAAAGCTGATAAAGAAGGATTTGAGATAAGTGTTGTTAAGACCAGCTTTAAGGCTAATACAAAAGCATTGGCAGAAAATGAAGGAGATGGACTTGCTAAGgtatacatgtttttagtttgtgccacttatttctatcagttttttttccttgcagggttatttctatcagttgtgttgtcttgtctccaaattggcacctgggtattgctgtcttgcatggcttcattcagtgacatactttgggcttgacaattgtatgttcctttctgcag

upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 12
AAAAGCTGAAAAGGAGGGATTTGAAGTAAGTGTTGCCAAGACTGGTTTTAAGGCTAACACAAAGGTCCTAGCCGAAAATGAAGGGGAGGGACTTGCTAAGgtgtatatac---aactccttttattcctgttctattct---ctggtacatgatagtttctacttttcttttgttactggaataggtggtaagtagttttctcacctg----ttaaaaacacaaagtgtttttatgcag---------------
 || ||||| ||||| ||||||||| |||||||||  |||||  ||||||||||||||||||||| ||| || || |||||||| || ||||||||||||||    || |   |     |||    ||||||  |||||    |  | || |     ||| | |     |   |||     |    || || | ||  |     | ||     |  |||    |||||    ||                    
GAAGGCTGACAAGGAAGGATTTGAAATAAGTGTTGTAAAGACCAGTTTTAAGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgcggtagtgtgtttccaccctgttgcattctaaatttatgcacggagaattccagtgga--tacattaaccagacctatgctagggagcctgtatccatggaacctctaaatttgaagtgacgatacatgtactattttgcctcag

upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S352_68V6.1 (Physcomitrella patens), 5'ss of exon 12
AAAAGCTGAAAAGGAGGGATTTGAAGTAAGTGTTGCCAAGACTGGTTTTAAGGCTAACACAAAGGTCCTAGCCGAAAATGAAGGGGAGGGACTTGCTAAGgtgtatatacaactccttttattcctgttctattctctggtacatgatagtttctacttttcttttgttactggaataggtggtaagtagttttctcacctgttaaaaacacaaagtgtttttatgcag
|  ||||||||||||||||||  ||||||| |||||||||||  | || || || || || ||||  ||||| ||||| || || || ||| | || ||||| |  || |        |      | || || ||||||||   ||   |||     |||| |    | ||       ||   | |  |||  ||   ||||   ||    |||| |            
ACTAGCTGAAAAGGAGGGATTCAAAGTAAGCGTTGCCAAGACCAGCTTCAAAGCCAATACCAAGGCACTAGCTGAAAACGAGGGTGATGGATTAGCCAAGgtatgaatgc--------tcgaatatcttttactctctggt-tgtgcctgtta----ttttttagactaacccagggcggccatga-cagtggtcgatcctgactaa---gcaaact------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371471|gb|EC935522.1|EC935522
EST:     AGGCTAACACAAAGGTCCTAGCCGAAAATGAAGGGGAGGGACTTGCTAAG                         TTGATATACAGACCGGATAATGGAGAGATCCTTGGAGTTCATATTTTTGGA
genomic: AGGCTAACACAAAGGTCCTAGCCGAAAATGAAGGGGAGGGACTTGCTAAGgtgtatatac ... ttttatgcagTTGATATACAGACCGGATAATGGAGAGATCCTTGGAGTTCATATTTTTGGA