Sequence
atgc intronic sequence ATGC exonic sequenceCTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os07g31460.2 (Oryza sativa), 5'ss of exon 11
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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GTGGAACAAGAAACTAGATTATGTAATTGCTATTTCAAAAGATGGAGTACGTGATGTAACAAAACGCTACACCAGAAAGTGGCATGAGgtag-aaaattttggcttggttaagacctgtgttgaggctgggtaggataggtgtgtttagaatgttttgatttttatttcatgcatactgcttg--tcaattgcag----------------------------
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G474236_T01 (Zea mays), 5'ss of exon 4
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtt--tttgatggggcacgaatattttc--atgttacag
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GTGGAACAAGAAGTTAAATTATGTTATTGCGATTTCTAAAGATGGAGTACGGGACGTAACAAAACGCTACACCAGAAAGTGGCATGAGgtag-agtttttttgt------cagttatgatctctgttgggtgagtgggcgatctttttt----ccctttgaac-tgggtttactttgttttagattgaagtggtttgatgtactgtatcttgtatctgcccttgcag
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA03G40660.1 (Glycine max), 5'ss of exon 12
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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GTGGGGGAAAAAATTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtag-------gttttacaatttatgc----tctttctttcacaagcatgaggatcctgatttc-ctgataatttatgacgaatttttgtatctttttcaaaattgag---------------------------
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 12
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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GTGGGGGAAAAAACTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGgtag-------gttttacaatttatgc----tctttctttcacaagcatgaggatcccaatt-tgctaataatttatgacgaatttttgtatctttttcaaaattaag---------------------------
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ38670 (Selaginella moellendorffii), 5'ss of exon 8
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattca-----tcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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ATGGGGAAAGAAGCTGAACTACGTCATT-CCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGGCAGAGgtacaaactatattcctgtatttgtgtggcgcttctttgactttgttgtaaaaggtagtgtctcgcag------------------------------------------------------------------------
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ38667 (Selaginella moellendorffii), 5'ss of exon 7
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattca-----tcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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ATGGGGAAAGAAGCTGAACTACGTCATTGCCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGCCAGAGgtacaaactatattcctgtatttgtgtggcgcttctttgactttgttgtaaaag--------------------------------------------------------------------------------------
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ38668 (Selaginella moellendorffii), 5'ss of exon 7
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattca-----tcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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ATGGGGAAAGAAGCTGAACTACGTCATTGCCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGCCAGAGgtacgaactatattcctgtatttgtgtggcgcttctttgactttgttgtaaaag--------------------------------------------------------------------------------------
upper sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ31479 (Selaginella moellendorffii), 5'ss of exon 8
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
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ATGGGGAAAGAAGCTGAACTACGTCATTGCCGTTGCGAAAGATGGAGTTTATGATGTTACAAAACGATACACACGGAAGTGGCCAGAGgtacaaactatattgtg----tggcgcttctttgactttgttgtaaaag--------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714174|gb|FC062919.1|FC062919EST: AAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAG GTTTTGTCCAGGCGAAATATTACTACAGAGGCTGAACTCTCTGCCGTTCTT
genomic: AAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagat ... catgttacagGTTTTGTCCAGGCGAAATATTACTACAGAGGCTGAACTCTCTGCTGTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGAACAAGAAATTGAATTATATAATTGCTATCGCAAAAGATGGAGTTTATGATGTCACTAAACGCTACACAAGAAAGTGGCATGAGgtaataagattattgtaacattcattcatcatcagtttttcagtaaagggcaattatttattctgcccttcgcatacgtgcatgcttgctgttttgttcagtttttgatggggcacgaatattttcatgttacag
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA