Sequence
atgc intronic sequence ATGC exonic sequenceTGCAAGTTGTGGGAGCAGTAGGTTTCCAGAACCGTCGTCTTGACATACCAAAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaagttcacatttgcagaccagattgcacatcaaaatgccattcttatgctgacaaaactttagcatggatttattgttctgcattttctaattcaatcagtggctttttctgtcatgttgttttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os03g06410.1 (Oryza sativa), 5'ss of exon 12
TGCAAGTTGTGGGAGCAGTAGGTTTCCAGAACCGTCGTCTTGACATACCAAAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaagttcacatttgcagaccagattgcacatcaaaatgccattcttatgctgacaaaactttagcatggatttattgttctgcattttctaattcaatcagtggctttttctgtcatgttgttttccag
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TGCAAGTTGTTGGGGCAGTCGGCTTCCAGGACAAGCGGCTCGATATTCCCAAGGAAATTGATCCTCTAGTTGCAAGGATCATATGGGAATGCTGGCAGAAgtgagtgtttagaaacaaacct-attttatgttgca---tcaataaagtact-------ctcttccaactatcaattgtgttgctagatccgagctaatatttggtttttaaacctcag-----------
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G038982_T01 (Zea mays), 5'ss of exon 8
TGCAAGTTGTGGGAGCAGTAGGTTTCCAGAACCGTCGTCTTGACATACCAAAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaagttcacatttgcagaccagattgcacatcaaaatgccattcttatgctgacaaaactttagcatggatttattgttctgcattttctaattcaatcagtggctttttctgtcatgttgttttccag
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TGCAGGTTGTGGGGGCAGTTGGTTTCCAGGATAGACGGCTTGATATTCCCAAGGAAGTTGATCCTCTGGTAGCAAGGATCATATTCGAATGCTGGCAGAAgtgagttataagaactaaacctgttgtctgatcaaagtctcctgtct-cggtcatggcactttaa-----atttgtgctaacatgtgctctg--tcaatcgccag-------------------------
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 13
TGCAAGTTGTGGGAGCAGTAGGTTTCCAGAACCGTCGTCTTGACATACCAAAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaagttcac---atttgcagaccagattgcacatcaaaatgccattcttatgctgacaaaactttagcatggatt--tattgttctgcattttctaattcaatcagtggctttttctgtcatgttgttttccag
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TGCAAGTTGTTGGTGCCGTTGGTTTCCAAAACCGTAGACTTGATATTCCTAAGGAAGTCGATCCTATAGTTGCAAGAATAATCTGGGAGTGTTGGCAACAgtaagcatgctcaacttaaagtttgttttattccttttttt-ttacacataccattaaatgatttcagcaaattttgcaactacacttcagtttccagtttatgacatttttctggcccccctccccgtttcag-
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 13
TGCAAGTTGTGGGAGCAGTAGGTTTCCAGAACCGTCGTCTTGACATACCAAAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaag--ttcacatttgcagaccagattgcacatcaaaatgccattcttatgctgacaaaactttagcatggatt--tattgttctgcattttctaattcaatcagtggctttttctgtcatgttgttttccag
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TGCAAGTTGTTGGTGCCGTTGGTTTCCAAAACCGTAGACTTGATATTCCGAAGGAAGTCGATCCTATAGTTGCAAGAATAATCTGGGAGTGTTGGCAACAgtaagcatgctcaattaaagtttgttttattcatttttttcttccacataccattaaatgatttcaggaaattttacaactacacttcattctccagtttga-catttttctgcccccccgtccccgtttcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30303225|gb|CB980019.1|CB980019EST: AAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGAC GGATCCGAACTTGCGCCCATCGTTTGCACAGCTGACAGTAGCTCTGAAGCC
genomic: AAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaagttcac ... tgttttccagGGATCCGAACTTGCGCCCATCGTTTGCACAGCTGACAGTAGCTCTGAAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAAGTTGTGGGAGCAGTAGGTTTCCAGAACCGTCGTCTTGACATACCAAAGGAAGTTGATCCCTTGGTTGCAAGGATAATCTGGGAATGCTGGCAGACgtaagttcacatttgcagaccagattgcacatcaaaatgccattcttatgctgacaaaactttagcatggatttattgttctgcattttctaattcaatcagtggctttttctgtcatgttgttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG