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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgatacttttccttatcatattgatgtgtcttttctctctaccaatccatttcttctttttcccaatctaacccaggatacttgaacttgctatctttccatttatgcag

Basic information

species Vitis vinifera
transcript Vv14s0006g02720.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G153704_T02 (Zea mays), 5'ss of exon 12
GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgatacttttccttatcatattgatgtgtcttttctctctaccaatccatttcttctttttcccaatctaacccaggatacttgaacttgctatctttccatttatgcag
| |||||||||| | || ||  | || || ||||| ||||  || |||||||| || ||||| || ||||||||  |||||||||||||||||||||  |   |||   ||| | ||    |||  |   ||| |   |||  ||  ||||  | |    |  | ||   |  ||  |||   ||                    
GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCACCTTATTCTGGTACTCTTGCTGTTGTTGGCACTGTTCTgtaagttgtcatgattc---atcctgtt----tgttctgattctatttgaatgtataacttcaatgttt-gacatgact-ggagtatatgattctgtgcag---------------

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA13G07780.2 (Glycine max), 5'ss of exon 12
-----------GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat-acttttccttatcatattgat------------gtgtcttttctctctaccaatccatttcttctttttcccaatctaacccaggatact--tgaacttgctatctttccattt-atgcag
           |||||||| ||| |||| |||||  | ||||| || ||||  |  || || ||||||||||||||||||||||| ||||| ||||||||||||||   | | ||||    || ||| ||||              | |||     || |  ||   || | |||||||      |   ||  |   | ||  |||   |    ||| |  |||| |  |||
GTCTCACCCAGGCTGCTTCTATGTTGCTTCTTTCTCTGTCTTTTACATGGAAGGTTCTTGCTCCATACTCTGGCACCCTTGCTGTTCTTGGGACTGTTCTgtaagtcatttaattttgtcaataatagtgattccattcagtgaacgacttaaacttcaatgaacttatatgttcttttattatttaagacttacatttctgatgactctatgttctatgaattttaaccag

upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 12
GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat-acttttccttatcatattgat------------gtgtcttttctctctaccaatccatttcttctttttcccaatctaacccaggatact--tgaacttgctatctttccattt-atgcag
|||||||| ||| |||| |||||  | ||||| || ||||  |  || || ||||||||||||||||||||||| ||||| ||||||||||||||   | | ||||    || ||| ||||              | |||     || |  ||   || | |||||||      |   ||  |   | ||  |||   |    ||| |  |||| |  |||
GCTGCTTCTATGTTGCTTCTTTCTCTGTCTTTTACATGGAAGGTTCTTGCTCCATACTCTGGCACCCTTGCTGTTCTTGGGACTGTTCTgtaagtcatttaattttgtcaataatagtgattccattcagtgaacgacttaaacttcaatgaacttatatgttcttttattatttaagacttacatttctgatgactctatgttctatgaattttaaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396221|gb|EC961902.1|EC961902
EST:     AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCT                         CTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
genomic: AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat ... atttatgcagCTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
EST: gi|110403571|gb|EC969185.1|EC969185
EST:     AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCT                         CTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
genomic: AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat ... atttatgcagCTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
EST: gi|110425042|gb|EC991417.1|EC991417
EST:     AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCT                         CTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
genomic: AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat ... atttatgcagCTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
EST: gi|30252112|gb|CB968751.1|CB968751
EST:     AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCT                         CTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
genomic: AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat ... atttatgcagCTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
EST: gi|110370956|gb|EC934605.1|EC934605
EST:     AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCT                         CTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
genomic: AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat ... atttatgcagCTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
EST: gi|110376760|gb|EC941834.1|EC941834
EST:     AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCT                         CTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT
genomic: AGTGCCCTGGCACCATACTCTGGCACCCTTGCTGTACTTGGCACTGTTCTgtaagttgat ... atttatgcagCTATGTGTTGTCCTTCTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCT