1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATAATTTGTGGAGCAGGGATCCTTTTTCTACCCAGAAACATGAATGCTTTTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATGgtatgatcaaagattccattttttctttttcagtacatgcttcattccatgcaatggagaagttggttaaaaggaagatacaagagaagctgtgtcctga...
species | Vitis vinifera |
transcript | Vv13s0156g00080.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATG GTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGCEST: gi|29784536|gb|CB345387.2|CB345387
genomic: TTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATGgtatgatcaa ... ggaacaacagGTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGC
EST: TTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATG GTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGCEST: gi|110397223|gb|EC962952.1|EC962952
genomic: TTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATGgtatgatcaa ... ggaacaacagGTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGC
EST: TTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATG GTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGC
genomic: TTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATGgtatgatcaa ... ggaacaacagGTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAATTTGTGGAGCAGGGATCCTTTTTCTACCCAGAAACATGAATGCTTTTATGTACATTTTATCAATAATCATCGGCATAGCAAACGCCTTAATGATGgtatgatcaaagattccattttttctttttcagtacatgcttcattccatgcaatggagaagttggttaaaaggaagatacaagagaagctgtgtcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaa