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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttcttgtgctgtttttatcatttagcttttccagcaattttaccttcccatttgttttcaaatgggaaacatatacttccatgctaatagatatctattttttttgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04660.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G35280.2 (Glycine max), 5'ss of exon 10
GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttcttgtgctgtttttatcatttagcttttccagcaattttaccttcccatttgttttcaaatgggaaacatatacttccatgctaatagatatctattttttttgcag
|| |||||||| ||||||||||||| || |||||||||||||| |||||||   ||   | |||| | |  | | |||  |  |   | |  || |   |||||   | | |||   || ||   || |  |||  |                       
GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttccatt---cagtttatctgttcttgctcctaaaattactg-acataagcattt---tactaattaaaacca---accttgatgacag----------------------

upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G32260.1 (Glycine max), 5'ss of exon 11
GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttcttgtgctgtttttatcatttagcttttccagcaat-tttaccttcccatttgttttcaaatgggaaacatatacttccatgctaatagatatctattttttttgcag
|| |||||||| ||||||||||||| || |||||||||||||| |||||||   ||  |||  | |||||  ||     | | ||   |  | |||||  |||||   | | |||   || ||   || |  |||  |                       
GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcctttcagcttatcttatctgttcttgctcctagagttactgaccttagcattt---tactaattaaaacca---accttgatgacag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319479|gb|CF372233.1|CF372233
EST:     GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTA                         ACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
genomic: GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttc ... ttttttgcagACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
EST: gi|110424687|gb|EC991055.1|EC991055
EST:     GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTA                         ACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
genomic: GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttc ... ttttttgcagACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
EST: gi|110699502|gb|EE076557.1|EE076557
EST:     GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTA                         ACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
genomic: GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttc ... ttttttgcagACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
EST: gi|110382983|gb|EC947317.1|EC947317
EST:     TTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTA                         ACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC
genomic: TTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttc ... ttttttgcagACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATC