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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCCATCCTGACAACTTACAATGGCCAGAAACTGCTGATACGTGATGTTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattattgagatgggtgtacactttctaaatttaaatttgtagtaatcatcaatttcgtggcttaggctattcactcattcaggttttgcgacatat...

Basic information

species Vitis vinifera
transcript Vv13s0019g00880.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 12
GATATCCATCCTGACAACTTACAATGGCCAGAAACTGCTGATACGTGATGTTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattattgagatgggtgtacactttctaaatttaaatttgtagtaatcatcaatttcgtggcttaggctattcactcattcaggttttgcgacatat-
|||||| ||  |||| || |||||||| |||||||| || || ||||||||||| || ||  |||||||||||||||| || || |||||||| |||||||||   |  | |        |     || || ||| || ||   | |  |  ||  |      | |   |  | |      |||  | |||  ||    | 
GATATCAATTTTGACTACATACAATGGTCAGAAACTTCTCATCCGTGATGTTATAAATAGGAGATGCGTTCCATATGACTTTATTGGTCCTCCTAGTAAGgtatgcttctcattgtttacttttaattatagattaaatttcaaaatggtt-tctttgataaagatggtgtcaattttgggttcttgatttctgatgattt

upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 12
GATATCCATCCTGACAACTTACAATGGCCAGAAACTGCTGATACGTGATGTTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattattgagatgggtgtacactttctaaatttaaatttgtagtaatcatcaatttcgtggcttaggctattcactcattcaggttttgcgacatat-
|||||| ||  |||| || |||||||| |||||||| || || ||||||||| | || ||  ||||||||||||| |||||||| |||||||| || ||||||   |  | |        |  | ||  || ||| || ||   | |  |        |   |     | | |||      |   | |||    | ||   
GATATCAATTTTGACTACATACAATGGTCAGAAACTTCTCATCCGTGATGTTGTAAATAGGAGATGCGTTCCATACGATTTCATTGGTCCTCCAAGCAAGgtatgcttcttattgttacttttaatta-tagattaaatttcaaaatggtttctttgatgaagatggtgtcaatttggggttcttgatttctgaagatgac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127856|gb|CB913195.1|CB913195
EST:     TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAG                         GTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
genomic: TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattatt ... ttctttacagGTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
EST: gi|161706722|gb|FC055075.1|FC055075
EST:     TTATCAACAGACGATGTGTTCCATATGATTTCATAGGTCCTCCCAGTAAG                         GTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
genomic: TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattatt ... ttctttacagGTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
EST: gi|110699544|gb|EE076634.1|EE076634
EST:     TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAG                         GTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
genomic: TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattatt ... ttctttacagGTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
EST: gi|30129758|gb|CB915097.1|CB915097
EST:     TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAG                         GTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG
genomic: TTATCAACAGACGATGCGTTCCATATGATTTCATAGGTCCTCCCAGTAAGgtaaattatt ... ttctttacagGTTACTACAGTAGATAAGTTTCAAGGTCAGCAAAATGATTTTATCTTACTG