Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtactatatttgcctctttttttcttttttaattagcaatatctggttcctttggcccaaattaaatccatcttctctgcaatttccaaacattaccatgagatataaaagcaaaaattatattaaaaatcatgagaatatgaaagatttggatgtggcagctctaatacttggagattaattgaacatgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30130365|gb|CB915704.1|CB915704
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110699424|gb|EE076409.1|EE076409
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|27582078|gb|CB004773.1|CB004773
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|77577354|gb|DV217389.1|DV217389
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|30132964|gb|CB918303.1|CB918303
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCAT
EST: gi|33410540|gb|CF216167.1|CF216167
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|30303799|gb|CB980593.1|CB980593
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGCCAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACCCACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110690502|gb|EE067657.1|EE067657
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110715292|gb|EE093173.1|EE093173
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|22012135|gb|BQ797169.1|BQ797169
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|156736486|gb|EV240607.1|EV240607
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|22010393|gb|BQ795427.1|BQ795427
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110361965|gb|EC925471.1|EC925471
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110359526|gb|EC921159.1|EC921159
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|32245507|gb|CD711326.1|CD711326
EST:     GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|27583335|gb|CB006030.1|CB006030
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|71873572|gb|DT022627.1|DT022627
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|71871048|gb|DT020103.1|DT020103
EST:     TGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: TGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110694959|gb|EE072432.1|EE072432
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110369469|gb|EC933629.1|EC933629
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|30132893|gb|CB918232.1|CB918232
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|30303733|gb|CB980527.1|CB980527
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110723312|gb|EE100478.1|EE100478
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAA                         CTTATCAACCCTAA
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAA
EST: gi|110721136|gb|EE097790.1|EE097790
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAANGAG                         CTTATCA-CCCTAAAGTTGAGATCAGCATGGTGG
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGG
EST: gi|110373757|gb|EC938084.1|EC938084
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|83275690|gb|DV939698.1|DV939698
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110732601|gb|EE108029.1|EE108029
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|33408479|gb|CF214106.1|CF214106
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|32246001|gb|CD711820.1|CD711820
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|33410414|gb|CF216041.1|CF216041
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110696154|gb|EE074987.1|EE074987
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110360290|gb|EC923209.1|EC923209
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|110695982|gb|EE074623.1|EE074623
EST:     CTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: CTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
EST: gi|71884738|gb|DT033793.1|DT033793
EST:     GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG                         CTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT
genomic: GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtacta ... gaacatgcagCTTATCAACCCTAAGGTTGAGATCAGCATGGTGGAAAACACACCAGACGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAGgtgagtactatatttgcctctttttttcttttttaattagcaatatctggttcctttggcccaaattaaatccatcttctctgcaatttccaaacattaccatgagatataaaagcaaaaattatattaaaaatcatgagaatatgaaagatttggatgtggcagctctaatacttggagattaattgaacatgcag

- - - - - - - - - - - - - - - - -  AAGGAG