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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTTCCAAAGAGGAACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataactctctcgctctctcactttctcatttttatgttcttagtagttgccacaaccatattttatgcttttgaagaaccctacccgaaattat...

Basic information

species Vitis vinifera
transcript Vv12s0178g00020.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137944|gb|CB923282.1|CB923282
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|71890676|gb|DT039731.1|DT039731
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|110357757|gb|EC921480.1|EC921480
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|32271127|gb|CD720286.1|CD720286
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCGGGAATAATTGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|30296234|gb|CB973028.1|CB973028
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|110363519|gb|EC927113.1|EC927113
EST:     ACACTCGTCATTCCTACACTTCATGACAAA-ATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|34362104|gb|CF403689.1|CF403689
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|32461194|gb|CD802368.1|CD802368
EST:     TCATGACAAATATTTTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
genomic: TCATGACAAATA--TTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA
EST: gi|30328230|gb|CD011492.1|CD011492
EST:     ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAG                         GTATTTTCACAGTTTCGGGAATAATTGACTCATTCGTGTACCATGGTCATA
genomic: ACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataa ... ttttgttcagGTATTTTCACAGTTTCAGGTATAATAGACTCATTCGTGTACCATGGTCATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTACTTCCAAAGAGGAACACTCGTCATTCCTACACTTCATGACAAATATTTGTGCCATAGTTGGAGgtgattataactctctcgctctctcactttctcatttttatgttcttagtagttgccacaaccatattttatgcttttgaagaaccctacccgaaattat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaac