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AGCCCTTGTTACACACTTCCAGAATTCAAGCCTTATGAATGAAGATAAGCGATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagctgagttattatagtctcctcttcttttctatatcacctgacaggagtagtgcaagtttcatgttccaatggcacaaaacatccaagtact...
species | Vitis vinifera |
transcript | Vv12s0142g00100.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAG GAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGGEST: gi|351017816|gb|FQ436169.1|FQ436169
genomic: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagc ... gatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGG
EST: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAG GAACCTTTTGCTTCCGGCAATTTGAACAATCTGTATCCGACAGCCAGATGGEST: gi|34544219|gb|CF512451.1|CF512451
genomic: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagc ... gatgatacagGAACCTTTTGCTTCCGGCAATTTGAACA-TCTGTATCCGACAGCCAGATGG
EST: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAG GAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGG
genomic: GATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagc ... gatgatacagGAACCTTTTGCTTCCGGCAATTTGAACATCTGTATCCGACAGCCAGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCCTTGTTACACACTTCCAGAATTCAAGCCTTATGAATGAAGATAAGCGATGCCGACCTATTCTCTTCCATTCAGAGGGCCAAGAGACTGTTGATCAGgtaacatagctgagttattatagtctcctcttcttttctatatcacctgacaggagtagtgcaagtttcatgttccaatggcacaaaacatccaagtact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaca