Sequence
atgc intronic sequence ATGC exonic sequenceATGTGGTTTGCCAACAAATTTTGATGCTAACTACTGCTATGCATTGGGTTATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCAgtttgtgtttctatcctttttttttctgttctcaattttattttccatctttttgttgcctttatgtttctttgtaagttcaagcatgtcccttttaactttagtggatgaacatcaaagtttaagttgctttaactctttattgaagtgattttgcttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g01220.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 5
ATGTGGTTTGCCAACAAATTTTGATGCTAACTACTGCTATGCATTGGGTTATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCAgtttgtgtttctatcctttttttttctgttct-caattttattttccatctttttgttgc-ctttatgtttctttgtaagttcaagcatgtcccttttaactttagtggatgaacatcaaagtttaagttgctttaactctttattgaagtgattttgcttccag
||| || | || || ||||||||| ||||||| ||||||||||| || ||||||||||| || || || || ||| ||||| ||| | ||||| || || || | | | | | || ||| | | | || ||| || | ||| | | | || || || ||| ||
ATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTATGCATTAGGCTATGGTGCTGGTGCCCTTCTCCAAAGTGGGAAGACAGGACTTATTTCGTCGgtacaatttctgaccttatcatcttatgtgatatactcaaatgagtcatacttgtattgtacctcgtaaaactgtgagttctctggcacagaatagatag-----------------------------------------------------------------
upper sequence: Vv12s0059g01220.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ13842 (Selaginella moellendorffii), 5'ss of exon 12
ATGTGGTTTGCCAACAAATTTTGATGCTAACTACTGCTATGCATTGGGTTATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCAgtttgtgtttctatcctttttttttctgttctcaattttattttccatctttttgttgcctttatgtttctttgtaagttcaagcatgtcccttttaactttagtggatgaacatcaaagtttaagttgctttaactctttattgaagtgattttgcttccag
|||||| | || |||||||||||| | | ||||||||||| ||||| |||| || ||||| ||||||||| ||||| |||| ||||||||| | || || ||| | | | | | | | | | || || | || |
GTGTGGTCTACCGACAAATTTTGATTCAACTTACTGCTATGCGTTGGGCTATGCCGCAGGAGCGCTCCTTCATGCTGGACAGACAGGATTGATTGCCTCGgtctgtagtgaagtaccatccagctatagtgtgtgactaatgctctagtttccag------------------------------------------------------------------------------------------------------------
upper sequence: Vv12s0059g01220.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ12684 (Selaginella moellendorffii), 5'ss of exon 12
ATGTGGTTTGCCAACAAATTTTGATGCTAACTACTGCTATGCATTGGGTTATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCAgtttgtgtttctatcctttttttttctgttctcaattttattttccatctttttgttgcctttatgtttctttgtaagttcaagcatgtcccttttaactttagtggatgaacatcaaagtttaagttgctttaactctttattgaagtgattttgcttccag
|||||| | || |||||||||||| | | ||||||||||| ||||| |||| || ||||| ||||||||| ||||| |||| ||||||||| | || || ||| | | | | | | | | | || || | || |
GTGTGGTCTACCGACAAATTTTGATTCAACTTACTGCTATGCGTTGGGCTATGCCGCAGGAGCGCTCCTTCATGCTGGACAGACAGGATTGATTGCCTCGgtctgtagtgaagtaccatccagctatagtgtgttactaatgctctagtttccag------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371529|gb|EC935625.1|EC935625EST: ATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCA GTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGCGGAACGGCA
genomic: ATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCAgtttgtgttt ... ttgcttccagGTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGAGGAACGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTGGTTTGCCAACAAATTTTGATGCTAACTACTGCTATGCATTGGGTTATGGTGCTGGAGCTCTCCTTCATTCTGGAAAGACTGGATTGATTTCTTCAgtttgtgtttctatcctttttttttctgttctcaattttattttccatctttttgttgcctttatgtttctttgtaagttcaagcatgtcccttttaactttagtggatgaacatcaaagtttaagttgctttaactctttattgaagtgattttgcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT