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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCGCACTCCTATATCGATGAAGTTCTTTCCTCGCTTCTTTTTGCTCTATTTTCTGGTTTTCCACATCTATTTCTTTTCTTATGCTTATGgtagggccttataattactgtttcttatttagctagaatttatatgtttcatattaattccctgctccacttatttttcag

Basic information

species Vitis vinifera
transcript Vv12s0034g02140.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S96_202V6.1 (Physcomitrella patens), 5'ss of exon 13
TGTCCGCACTCCTATATCGATGAAGTTCTTTCCTCGCTTCTTTTTGCTCTATTTTCTGGTTTTCCACATCTATTTCTTTTCTTATGCTTATGgtaggg--ccttataa--ttactgtttcttatttagctagaatttatatgtttcatattaattcc----ctgctccacttatttttcag-----------
 ||  | || ||  |||||||| |||||||||||||||||||||| ||||||||  ||| ||||||||| || ||||| |||||| | || ||||     | |||| |  || || ||||   | |   |    |||   |  ||   | |||||       ||||   ||  |  || |            
CGTGAGGACGCCCCTATCGATGCAGTTCTTTCCTCGCTTCTTTTTTCTCTATTTCATGGCTTTCCACATTTACTTCTTCTCTTATACCTACGgtaaatttctttatcagcttcctatttcacctctgtgtttgcttttcttccttagcagtaatttgattgttgctgtgctgttgcttaaagttcatctatt