Sequence
atgc intronic sequence ATGC exonic sequenceGCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctggatattgtgcttggtaaaatcgagcattacaaattttgaattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G08170.1 (Glycine max), 5'ss of exon 11
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctgg-atattgtgcttggtaaaatcgagcattacaaattttgaattg----
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GCCTTGAAGTACGTACATTCTGCTGTACTTGATAAACTTAGTGGGAAAGAACTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGgtatg--attccaagtcatttcaatatgtcca-gtcc-attaagcatcacttcatgagcatagctaccatgatagaggcgtat-ttagaaatgttaagattctag
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 12
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatg----tagttttctgttgccataatttttccatgtctgatttaacaaagctatgctggatattgtgcttggtaaaatcgagcattacaaattttgaattg
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GCTTTGAAGTATGTACATTCTGCTGTTATAGACAAACTTGATGGGAAAGAGCTAGAGTTGCTGATTGCCCTTCTTCCAGACAATAATGGCTCTTTGTATGgtatgattctaagtctcttccatttgcattactccataatcataactataagattgtactggtttataatcacagaaatgtttagaggtaatagtacctt----
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA17G12850.1 (Glycine max), 5'ss of exon 12
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctggatattgtgcttggtaaaatcgagcattacaaattttgaattg----
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GCCTTGAAGTATGTACATTCTGCTGTACTTGATAAACTTGGTGGGAAAGAACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGgtatg--attccaagtcactccaatacgtcca-gtccattagcatcacttcatgatcatagctac-catgatagaggtgtatattaaatgttaagaggttctag
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G21450.1 (Glycine max), 5'ss of exon 13
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctg-gatattgtgcttggtaaaatcgagcattacaaattttgaattg--
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GCTTTGAAGTATGTACATTCTGCTGCTATAGACAAACTTGATGGGAAAGAGCTAGAGTTGCTGATTGCCATTCTTCCAGACAATAATGGCTCTCTCTATGgtatg--attctaggtctctcttccatttgcattacctcataatcataactataagatggtactg-gtttataatcacagaaatgtttagaggtaatagtaac
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S173_134V6.1 (Physcomitrella patens), 5'ss of exon 11
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctggatatt-gtgcttggtaaaatcgagcattacaaattttgaattg-------------------------------
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GCTTTGTATCAACTCTGTGAAGATGTGAATAGAAGGACAAAGGGGAAGGGCTTGGATCTGCTTATTGCAATTCTTCCCGACAACAACGGGTCTTTGTATGgtatgttctccttcaa-attacgaaccataaatttaattccccaggaaagtgtgcaggactttcataatgtgttggattttcaatggtggttattaatgtatgaaacgtcatcgcgttgcatgtgtgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349828457|gb|FQ417199.1|FQ417199EST: GTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATG GTGATTTGAAGCGGATTTGTGACACAGATCTGGGGTTGATTTCTCAGTGCT
genomic: GTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagtt ... ctacatttagGTGATTTGAAGCGGATTTGTGACACAGATCTGGGGTTGATTTCTCAGTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctggatattgtgcttggtaaaatcgagcattacaaattttgaattg
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaa