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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAGgtaactgcattttcatttttacaattttgatttcttttacccacatttttagtaaggttctgcattactgaattataaatttcatctattagcaacttat...

Basic information

species Vitis vinifera
transcript Vv11s0016g04210.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545906|gb|CF514138.1|CF514138
EST:     GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCAGATTCCAG                         TCATCAAGGAGTGATAAGCTTTGGCAG
genomic: GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAGgtaactgcat ... tcctttgcagTCATCAAGGAGTGGGAAGCTTTGGCAG
EST: gi|110696912|gb|EE073450.1|EE073450
EST:     GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAG                         TCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTT
genomic: GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAGgtaactgcat ... tcctttgcagTCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTT
EST: gi|27584152|gb|CB006847.1|CB006847
EST:     GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAG                         TCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTT
genomic: GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAGgtaactgcat ... tcctttgcagTCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTT
EST: gi|34544915|gb|CF513147.1|CF513147
EST:     GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAG                         TCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTT
genomic: GAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAGgtaactgcat ... tcctttgcagTCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTT