Sequence
atgc intronic sequence ATGC exonic sequenceTCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataaagtagaaagacgatgctctttatttcagatgcaccatttagtcatttgagagtttgcaggactttctgtaaata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 5'ss of exon 12
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataa--agtagaaagacgatgctctttatttcagatgcaccat--ttagtcatttgagagtttgcaggactttctgtaaata
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TGTTTCAATGTGGAATTTGACAAAGGTGGAAATTCAACTGTGCAACATGTTGTCTCCCGAAGGGCCAAAAGTCTCTCTTGGTTCTTATAACTGGGGACTCgtgagtttccctttcaacgcacctacttatttattatttagttatcttgcttttcctattatcatgatttgtaacttt-gttttggttgaactttcaattttag
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G35860.1 (Glycine max), 5'ss of exon 11
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactact---attcctcataaagtagaaagacgatgctctttatttcagatgcaccatttagtcatttgagagtttgcaggacttt-ctgtaaata
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TCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTATCTCCCGAGGCACCACAACTCTTTCTCGCTTCTTATAATTGGTGTCTTgtaagtatttttgtcctgcttgtttttttttttttttgtggacggatttaatttaagaggtgttgtttatcc--tggatttcttatacatttttactttaga--
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 12
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataaagtagaaagacgatgctctttatttcagatgcaccatttagt-catttgagagtttgcaggactttctgtaaata
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TCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattttcgtcctgattgttttaagaggtattgtttatcttggatttcttatacattttttactgtagagttgagttcttttgactaaatctttat-
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 12
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataaagtagaaagacgatgctctttatttcagatgcac-catttagtcatttgagagtttgcaggactttctgtaaata-
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TTTCTCAATGTGGAACTTGACAAGGATAGAAGTTCTACTTTGCAACATATTGTCCCCAGAGGCACCTCGACTTTCTCTGGCTTCTTATAATTGGTTTAAAgtaagtatttctccaagtact--taaaccaaaaaagtgtttcaccaaccctcctttatacgtggatggttgagtgatgctatcctagatgtcttaaacacat
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G08510.1 (Glycine max), 5'ss of exon 12
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataaagtagaaagacgatgctctttatttcagatgcac-catttagtcatttgagagtttgcaggactttctgtaa-ata
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TTTCTCAATGTGGAACTTGACAAGGATAGAAGTTCTACTTTGTAACATATTGTCCCCAGAGGCACCTCGACTTTCTCTGACTTCTTATAATTGGTTTAAAgtaagtattttcccaagttct--taaacccaaaaagtgtttcaccaaccctcctttatacgtggatggttgagtgatgttatcctagatgtcttaccacatt
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 12
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagta-tcactactattcctcataaagtagaa--agacgatgctctttatttcagatg-caccatttagtcatttgagagtttgcaggactttctgtaaata----------------------
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TCTGTCAATGTGGAATTTGACGAGACGAGAAGTTCAGCTATGCAATATGTTATCCCCTGAGGCTCCCCGTCTCTCTCTTGCAACTTACAACTGGGGACTTgtatgtgctttcaacctccttttattaattagaattagattaaactcttgagtaatagtgtcgaaagttatggggatgatagatatggaggtaacatattcgttttggttggggggaaatttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965468|gb|GW839039.1|GW839039EST: TATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTT GTGTTTATTGCATTGCTGGTGGATAATTTTTTGTACCCTGTTTCTGCATTC
genomic: TATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatca ... atttgagcagGTGTTTATTGCATTGCTGGTGGATAATTTTTTGTACCCTGTTTCTGCATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataaagtagaaagacgatgctctttatttcagatgcaccatttagtcatttgagagtttgcaggactttctgtaaata
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