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CACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTACACAGGGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagcattttcattaaaaaaatttattggttttgttgaataactaaaaaataatttattgatttggatgagcatggtaaaagaaaaagggaattg...
species | Vitis vinifera |
transcript | Vv11s0016g02850.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|110696522|gb|EE072712.1|EE072712
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|30329681|gb|CD012943.1|CD012943
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|29784840|gb|CB341314.2|CB341314
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GTTTACAGTTGGGCCTGTCAATGATC-GACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGAC-GATCNAAGATTGTGATAACAGATAGAATGTGGGCEST: gi|161706980|gb|FC057287.1|FC057287
genomic: GTTTACAGTTGGGCCTGTCAATGG-CAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAG-TTGTGATAACAGATAGAATGTGGGC
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|33403868|gb|CF209495.1|CF209495
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGGAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|33409346|gb|CF214973.1|CF214973
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|34320835|gb|CF373589.1|CF373589
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|30256405|gb|CB972248.1|CB972248
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|33409425|gb|CF215052.1|CF215052
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTTTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|110363721|gb|EC927331.1|EC927331
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|71884224|gb|DT033279.1|DT033279
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|161705710|gb|FC056619.1|FC056619
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|110361259|gb|EC924720.1|EC924720
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|71882578|gb|DT031633.1|DT031633
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|30256378|gb|CB972221.1|CB972221
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|30256486|gb|CB972329.1|CB972329
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|110361880|gb|EC925383.1|EC925383
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|110729768|gb|EE106084.1|EE106084
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTEST: gi|351045413|gb|FQ447678.1|FQ447678
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
EST: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTAT CGAGTTATTGAAGGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
genomic: GGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagc ... tggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTACACAGGGTTTACAGTTGGGCCTGTCAATGGCAGACATTCTTATATACCTTTCTATgtgagttagcattttcattaaaaaaatttattggttttgttgaataactaaaaaataatttattgatttggatgagcatggtaaaagaaaaagggaattg
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