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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttacaaaatacttcaagaagctagcattaggcatctagtcccaaattaatttaatttttgtgttcacttgcag

Basic information

species Vitis vinifera
transcript Vv10s0523g00030.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S37_28V6.1 (Physcomitrella patens), 5'ss of exon 12
TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttacaaaatacttcaagaagctagcattaggcatctagtcccaaattaattt-----aatttttgtgttcac-ttgcag-----------------------------------------------------------------------
| |||| ||  | ||||| |||||||||||||| || || ||||| || || ||||| || |||||||||||||| | ||| || || |  |||||||||||      |||  | |     |   | ||      |||||      || | ||     ||||||| |||| |  ||| ||                                                                       
TGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTGTATATCACAAGgtatggctatagataagattacatcctttgtagccctagtttgtttttcacttttctgaatttttttgttgatattgaagtgccacctgggttactcttttccttccgactgtgaatcactctcaccaagcgctttctgtttgtaccacag

upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S154_52V6.1 (Physcomitrella patens), 5'ss of exon 12
TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttaca---aaatacttcaagaagctagcattaggcatctagtcccaaat---taatttaatttttgtgttcacttgcag---------------------
 ||||| ||  ||||||||||||||||||| ||  | || |||||||  || || |||||||| || |||||| |||| || || |||| |||||| ||||||| |   | |  || ||   |  |            ||  |   | |    |  |  |  |||||| ||  |   ||                      
CAGAGGACACACAAATGAGAAGAATTTTGTAGGATTGACTGTAAACAATGAGTATATTGCCTGCGGGAGTGAATCAAATGAGGTTTTCGTGTATCATAAGgttagacccagactctacatacactttttccagattcactgattgtacaactgtggtgcagattttgtttttgca-acatttctccaatttaccagtctcc

upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S86_153V6.1 (Physcomitrella patens), 5'ss of exon 12
TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttacaaaatacttcaagaa---gctagcattaggcatctagtcccaaatta--atttaatttttgtgttcacttgcag---------------------
 | ||| ||  | ||||| ||||||||||| || || || || ||||| || || || ||||||||||||||||||||||| ||||| | |||||||||||| |||   | ||| || |    | ||  |||  |   || |      || |  |||  | ||| |   |||   | |                      
AAAAGGTCACACCAATGAAAAGAATTTTGTTGGACTTACTGTCAACAGTGAGTATATCGCCTGTGGCAGTGAAACAAACGAGGTGTTTGTGTATCACAAGgtaacattctgcttgaacagagtgttaatattttgtgacttgctgtggatgactattggactttggatgtcaaaaggaaaggacttaaggtgaatttttt

upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S135_17V6.1 (Physcomitrella patens), 5'ss of exon 12
TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttacaaaatacttcaagaagctagcattag----gcatcta------gtcccaaattaatttaattt---ttgtgttcacttgcag-------------
 | ||| ||  | ||||| ||||| ||||| ||  | || || |||||||||||||| ||||||||||||||||| ||||| ||||| | |||||| |||||       |  ||  |    || |  |||     | || ||      ||  |   ||  ||  |  |   || |||  || ||  |             
GAAAGGACACACCAATGAAAAGAACTTTGTTGGATTGACTGTCAACAGCGAATACATCGCCTGTGGCAGTGAAACGAACGAGGTGTTTGTGTATCATAAGgtattgtcctgattgtatgttctggttttaatttagaatttacatgacgtttcgtgttttttagaactcggttttgtatacatgaggcaaagtgaaattt

upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ28584 (Selaginella moellendorffii), 5'ss of exon 12
TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttacaaaatacttcaagaagctagcattaggcatctagtcccaaattaatttaatttttgtgttcacttgcag-------
 | ||| ||| | || |||||||| ||||| ||  | ||||| |||||||| |||||||| || || |||||||| ||||||||  | | |||||||||||| |        | ||      |    ||||  |   ||     ||| ||| | |   || ||||   |||  |       
CACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAGTTAACAGCGAGTACATTGCGTGCGGTAGTGAAACGAACGAAGTCGTGGTGTATCACAAGgtaag-------tccatttgattgattttagagaaaaaga---gaatcaatctgaggcttttgtttgtttgttgcgagcag