1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgtatgttacagtttgaattattttgattatagtcagtattatctcatttttttgtccacttaatgtagctgcctttcattttagccaagtgcc...
species | Vitis vinifera |
transcript | Vv10s0116g01480.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAEST: gi|294964448|gb|GW838251.1|GW838251
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAEST: gi|71864219|gb|DT013274.1|DT013274
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAEST: gi|71861201|gb|DT010256.1|DT010256
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAEST: gi|71868220|gb|DT017275.1|DT017275
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAEST: gi|37189774|gb|CF609123.1|CF609123
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAEST: gi|110729049|gb|EE105210.1|EE105210
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAEST: gi|110718184|gb|EE094729.1|EE094729
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
EST: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATAT GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
genomic: GATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgta ... ttttgtttagGACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgtatgttacagtttgaattattttgattatagtcagtattatctcatttttttgtccacttaatgtagctgcctttcattttagccaagtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG