Sequence
atgc intronic sequence ATGC exonic sequenceTCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaactttctcatccaatctcaaattctttctacatcattctcttcttatcttgctctatgcattagttttacaatgcaaacttatcaatgcgtattttacctgatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 12
TCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaactttctcatccaatctcaaattctttctacatcattctcttcttatcttgc-tctatgcattagttttacaatgcaaacttatcaatgcgtattttacctgatgcag
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CCTTAAAGCTAGTCCCTATGCAGTTCCTTGTGCAAGACCTGGAGGCTTCCCCAGCACCCAGGTCATTTTACCCCTTGCTCATACTATTGAGCACGAGGAGgtattaa---tctgaacta-tgtgataacctcctttctgtattcctaaaacatatggtatatgctcaattgtgacatactgcaatggtgcag----------------------
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 12
TCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaactttctcatccaatctcaaattctttctacatcattctcttcttatcttgctctatgcattagttttacaatgcaaacttatcaatg-cgtattttacctgatgcag
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CCTTAAAGCTAGTCCCTATGCAGTTCCTTGTGCAAGACCTGGTGGCTTCCCCAGCACCCAGGTCATTTTACCCCTTGCTCATACTATTGAGCACGAGGAGgta-------------ttaatctgaaata-tgtgaataacctcctttccgcatttc----------taaaacatgtaatgtatactcaattgtgacatactgcaa-tggtgcag
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 12
TCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaa--ctttctcatccaatctcaaattctttctacatcattctcttcttatcttgctctatgcattagttttacaatgcaaacttatcaatgcgtattttacctgatgcag
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TCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTGGTTTCCCGAGCAGCCATGTCATTATACCACTTGCTCATACTATTGAGCATGAGGAGgtattaaatctttttcaatgaatgattaatgaacctcattttgtaattcctatttatttatatgcccattttccacccactgcaatgatgcag----------------------
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 12
TCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaa-ctttctcatccaatctcaaattctttctacatcattctcttcttatcttgctctatgcattagttttacaatgcaaacttatcaatgcgtattttacctgatgcag
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TCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTGGTTTCCCAAGCAGCCATGTCATTATACCACTTGCTCATACTATTGAGCATGAGGAGgtattaatctttttcagtgaatgattgatgaacttcattttataat--tcctatttttttatatgc--tcattttccac--ccactgcaatgatgcag----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30256255|gb|CB972098.1|CB972098EST: CCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAG TTCTTGGAGGTGGTTCGTCTAGAAGGACATGCATTCTCGCCTGAGGATGTG
genomic: CCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaactt ... cctgatgcagTTCTTGGAGGTGGTTCGTCTAGAAGGACATGCATTCTCGCCTGAGGATGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTAAAGCTAGTCCTTATGAAGTTCCCTGTGCAAGACCTGGAGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTCGCCCATACAGTGGAGCATGAGGAGgtgacaactttctcatccaatctcaaattctttctacatcattctcttcttatcttgctctatgcattagttttacaatgcaaacttatcaatgcgtattttacctgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG