Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttattgatctctagaatttgactttgccatttataagttcttctaaacttgcttattaatgtgcatatgccatcacatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 12
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttattgatctctagaatttgactttgccatttataagttcttctaaacttgcttattaatgtgcatatgccatcacatag
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CCTTGACAGGCAGGGTCAGGGTCAGGTTGTCACTTGTTCAGGAGCATTTAAAGATGGTTCCCTTCGGGTGGTTCGGAATGGGATAGGTATCAATGAGCAGgtattga--attaagatctatccaatattgtcc-----aattttagttctgcata---aagttgagctata-ttatctcttatcatgtaattag----------
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 12
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttattgatctctagaatttgactttgccatttataagttcttctaaacttgctt-attaatgtgcatatgccatcacatag
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CCTTGATAGGCAGGGTCAAGGTCAGGTGGTCACTTGTTCTGGGGCGTTTAAAGATGGTTCCCTTCGGGTGGTTCGTAATGGTATAGGGATTAATGAGCAGgtatt-tttatggtagtt-tattattgccaacttttt-aatgtggagaagttttgagttatttccccctctcctgcttgattag---------------------
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 12
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctgg---cttatttcaaccattttct----tattgatctctagaatttgactttgccatttataagttct---tctaaacttgcttattaatgtgcatatgccatcacatag--------------------------------
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CCTTGAAAGGCAGGGCCAAGGTCAGGTTGTAACTTGCTCTGGAGCTTACAAGGATGGTTCTCTTCGCGTCGTTCGTAATGGAATAGGAATTAATGAACAGgtcagctccccttcctccaccacagtgtggaacatttgctcccaagactcattcaaaaggaatggaaattggaaaaacaaatctttatatcaatg-gcacacacc-ttacaaaatattaatttttttatgcatgtatttggtctag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 12
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttattgatctctagaatttgactttgccatttataagttcttctaaacttgcttattaatgtgcatatgccatcacatag-------------------------------------------
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CCTCGAAAGGCAGGGCCAAGGTCAGGTTGTAACTTGCTCTGGAGCTTACAAGGATGGTTCTCTTCGTGTCGTTCGTAATGGAATAGGGATTAATGAACAGgtcagctccccttcctctacctcagtgtggaatatttgcacccaagaca--cattcaaaaggaatggaaattggaaaaataaatctttatat-taatgacaaactccttacaaaatattaatttttttatgcatgtatttgatctag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 12
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttattgatctctagaatttgactttgccatttataagttcttctaaacttgcttattaatgtgcatatgc-catcacatag
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CCTTGAGAGACAGGGGCAAGGTCAGGTTGTAACTTGCTCTGGAGCATACAAGGATGGTTCTCTTCGCATAGTTCGCAATGGGATAGGAATAAATGAACAGgtttggtgtatattag--gattgtcaatttgtctc---agtgtcatgtaagca---atattctcatctgatgtaatctaataaaactctgctgtatattgcag--
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 5'ss of exon 11
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttat-tgatctctagaatttgactttgccatttataagttcttctaaacttgct-tattaatgtgcatatgccatcacatag
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CCTCGAGAGACAGGGGCAAGGTCAGGTTGTAACTTGTTCTGGAGCATTTAAGGATGGTTCCCTCCGCGTAGTTCGCAATGGAATAGGAATCAATGAACAGgtttgatttatgcgcgaaatctcattgtcttgtatgcacaattttctcatatggtttctatat-cttaaaactccgctctattacag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294966440|gb|GW839547.1|GW839547EST: AAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAG GCATCAGTGGAACTTCAAGGCATCAAAGGACTGTGGTCATTGAGATCTTCT
genomic: AAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggctta ... catcacatagGCATCAGTGGAACTTCAAGGCATCAAAGGAATGTGGTCATTGAGATCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCAGGGGCTTATAAAGATGGTTCTCTTCGCATTGTTCGAAATGGAATAGGAATCAATGAACAGgtctggcttatttcaaccattttcttattgatctctagaatttgactttgccatttataagttcttctaaacttgcttattaatgtgcatatgccatcacatag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG