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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCAATGACACCTTCCAGTTGCATTGATGAATCTGGTTTCCTGCAGTCTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgccttctttgatttcttgtttctatttctgatatgatatgctatgattgaggctacaaatactggtattttgcctttgattcttctgttggtt...

Basic information

species Vitis vinifera
transcript Vv10s0003g04100.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730479|gb|EE107603.1|EE107603
EST:     CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG                         GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: gi|110362061|gb|EC925568.1|EC925568
EST:     CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG                         GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: gi|110381261|gb|EC946584.1|EC946584
EST:     CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG                         GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: gi|110387765|gb|EC952459.1|EC952459
EST:     CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG                         GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
EST: gi|110386444|gb|EC951038.1|EC951038
EST:     CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAG                         GTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC
genomic: CTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGgttagctgcc ... tttttgacagGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGC