1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAGTGGGAGGCGATTAATGTGGCAAAACTCATTAGGACACTGTGTTTTGAAAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGgttggtcttttctagacacttgtttattctttttctttccatgtttttcctgagttttattaatccctgtgcacaatgctttagtgctcaagttttagcattttgggggtgtgtctgcag
species | Vitis vinifera |
transcript | Vv10s0003g03710.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAG ACTGTTGTCTTGATGCTGTTTAATGATGCGCAAAAGCTTAGCTTTCAAGATEST: gi|110417958|gb|EC984063.1|EC984063
genomic: AAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGgttggtcttt ... gtgtctgcagACTGTTGTCTTGATGCTGTTTAATGATGCGCAAAAGCTTAGCTTTCAAGAT
EST: AAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAG ACTGTTGTCTTGATGCTGTTTAATGATGCGCAAAAGCTTAGCTTTCAAGATEST: gi|30133901|gb|CB919240.1|CB919240
genomic: AAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGgttggtcttt ... gtgtctgcagACTGTTGTCTTGATGCTGTTTAATGATGCGCAAAAGCTTAGCTTTCAAGAT
EST: AAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAG ACTGTTGTCTTGATGCTGTTTAATGATGCGCAAAAGCTTAGCTTTCAAGAT
genomic: AAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGgttggtcttt ... gtgtctgcagACTGTTGTCTTGATGCTGTTTAATGATGCGCAAAAGCTTAGCTTTCAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGGGAGGCGATTAATGTGGCAAAACTCATTAGGACACTGTGTTTTGAAAGCAGAGTTTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGgttggtcttttctagacacttgtttattctttttctttccatgtttttcctgagttttattaatccctgtgcacaatgctttagtgctcaagttttagcattttgggggtgtgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT