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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGgtacctggtttgtattcaatgggtattctatgcttgttcttttgagttggcgttgtggatgattaatttgtctgagcag

Basic information

species Vitis vinifera
transcript Vv10s0003g03080.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g39850.1 (Oryza sativa), 5'ss of exon 12
---ACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGgta-cctggtttgtattcaatggg--tattctat--gcttgttcttttgagttggcgttgtgga-tgat---taatttgtctgagcag------------
     |||||| |||||||| || || || || ||  | ||||| ||||||||||| ||||||||||||||||| ||||| |||||     |||||   || |   ||  | |||||  | ||  ||    |      |  || ||  |    || | |||    || ||      | ||             
TCTGGTGGAGGTACACTTCCGATCACAGCGAGGACACTGGAAACCATAATTCGTCTATCTACTGCTCATGCCAAGATGAAATTGAGACATGAGgtaatttgctacatacaccatgggcttgtttaatcaagtaacctgtaagaattatctagatgaactgacatatagttccctgaaacatgacagaaacttg

upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G100639_T01 (Zea mays), 5'ss of exon 12
---ACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGgtacctggtttgtattcaatgggtattctatgcttgt------tcttttgagttggcgtt-----gtggatgat-taatttgtctgagcag----------------------------------------------------------------------------------
     |||||| |||||||||||||| || || ||  | ||||| ||||||||||| || || ||||||||||| |||||  ||||     |||||  | ||||  |||| |   | |  |||  |   |      | || ||  |    |||         ||||   ||||| ||||                                                                                       
TCCGGTGGAGGTACACTTCCAATTACAGCAAGGACACTGGAAACCATAATTCGTCTATCGACAGCTCATGCCAAGATGAAACTGAGGCATGAGgtattttgttt--attctaccagcaacctagccacatcaataattttctggatgaaagttcaccaagaaatgaagcaatttctctgttttacaaacactttattttttgtaaggataaactgagccgtttgtccttgagaagatctcatcatggcgtcaatgtcttgttgcag

upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 12
ACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGgtacctggttt-----gtattcaatgggtattctatgcttgttcttttgagt-tggcgttgtggatgattaatttgtctgagcag----------------
||||||||||||||||| || ||||||||||| |||||||| ||||| ||||| || || |||||||||||| |||||||||| ||| |||||| ||  ||     ||| || || |   |    |   || | |||  | | | | |   |   ||   | ||||  | |  ||                
ACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGgtacttgacttggcatgtactctatagtggtctcttctctgctatttataatatagtgagatacctgtccattttga-taacaagttcaggggtaatgtca

upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G08920.1 (Glycine max), 5'ss of exon 12
ACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGgtacctggtttg-tattcaatgggtattctatgcttgttcttttgagt-tggcgttgtggatgattaatttgtctgagcag-------------------
||||||||||||||||| || ||||||||||| |||||||| ||||| ||||| || || |||||||||||| |||||||||| ||| |||||| ||  |||  ||  | |   || |     | |  |||  |   | |    | |||    |    |   | |    |                    
ACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGgtacttgacttggcatctactctatagtgctctccttctctgctatttataatatagtgagatacgtgtccatgttgataacaagtccaggggcaaagtc

upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G46280.1 (Arabidopsis thaliana), 5'ss of exon 12
ACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATAATTCGTCTTTCTACTGCTCATGCCAAAATGAAGTTGAGTAGACAGgt----acctggtttgtattcaatgggtattc---------tatgcttgttcttttgagttggcgttgtggatgattaatttgtctgagcag
|||||||| || ||||| || || ||||||||  |||| ||||||||||||||| |||| || |||||||||||||||||||||||  ||||    | ||   |   ||    ||  |   |         |     |||||| || || |    |      |||| | ||| | |    ||
ACTGGAGGTACGCTTCCGATAACAGCCAGAACTCTAGAGACAATAATTCGTCTTGCTACGGCACATGCCAAAATGAAGTTGAGTAGCGAGgtaacaatctaactcaaatcttctgtttccccacctggtcgtgaatatgttctattcagattctttctaaagtgataactttattttgaaag