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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATATGATGGAAAACTGAATCCAACTTTTGCGGAAGGCGCATTTCAGCTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAGgtttaatattccttctcattttgctaaaattagtccatacacacatttctgtagtttatgtgctggaaagcaggttatcttcttgagtcatgttctgctttccttatcttttgaagttgctccacttgtag

Basic information

species Vitis vinifera
transcript Vv10s0003g01640.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G12480.1 (Glycine max), 5'ss of exon 12
TTGAATATGATGGAAAACTGAATCCAACTTTTGCGGAAGGCGCATTTCAGCTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAGgtttaatattccttctcattttgctaaaattagtccatacacacatttctgtagtttatgtgctggaaagcaggttatcttcttgagtcatgttctgctttccttatcttttgaagttgctccacttgtag
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TTGAGTCTGATGGTAAATTAAATGAAACTTTTGTGGAAGGTCCATTTGAGCTTCCGGTGTCTAGCATACGGGCATATATAAAGGATCCAATAACACCCAGgtatagccttatctttgtggttgtctttcccctccattttttaccctcatatactttaatcttttg----ttgtacacctttttgtgtcacatttag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013609|gb|FQ429750.1|FQ429750
EST:     CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAG                         GTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
genomic: CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAGgtttaatatt ... ccacttgtagGTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
EST: gi|161721461|gb|FC070452.1|FC070452
EST:     CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAG                         GTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
genomic: CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAGgtttaatatt ... ccacttgtagGTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
EST: gi|351019257|gb|FQ429417.1|FQ429417
EST:     CTTCCAGTATCAAGCATAGGGGCATATATAAAGGATCCCATCACTCCCAG                         GTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
genomic: CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAGgtttaatatt ... ccacttgtagGTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
EST: gi|110361661|gb|EC925153.1|EC925153
EST:     CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAG                         GTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT
genomic: CTTCCAGTATCAAGCATAAGGGCATATATAAAGGATCCCATCACTCCCAGgtttaatatt ... ccacttgtagGTTTGTACATGTGAGCTCTGCTGGAGTCACCCGACCTGAGAGGCCAGGACT