Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttgatccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g01150.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g42850.1 (Oryza sativa), 5'ss of exon 16
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttgatccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag
|||    || ||| |    ||||||||||| || ||||||||||| || |||||||||||| | ||||||||||||||||| || || ||||  ||||||||  || | | |       ||||| | |        | |   |   | ||   |    ||  ||   |    |                                                                                                         
CCTCCAGGAGTTGGTATCTTCTCATGATGCTGTCTTCTTGCTGACCGACACAAGGGAAAGTAGGTGGCTTCCAACACTTCTCTGCGCAAATGAAAACAAGgt-aattcttgtgtgtattcttcactaatgtagacttgtgaagtgttacatgataatatccctcgcaccgcag---------------------------------------------------------------------------------------------------------

upper sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA12G01250.1 (Glycine max), 5'ss of exon 10
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttga-tccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcc-tatgcag
  | ||||| || |||||  |||||||| | ||||| ||  |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||  ||  |||| |||||  | | |      | | |   |   | |  |    || || ||   |       |  |   | || ||      ||  |  | | ||    ||  ||||||  | ||   ||| ||    ||  |   |  |  || | | ||| |   ||  | |||||
TTTGTGTGATTTAATTGATGCTCATGATTCCGTTTTTTTATTGACTGATACAAGGGAAAGTCGATGGCTCCCAACACTTCTCTGTGCCAATACTAACAAGgttgggtcagtttattctca--taaatggcccatatgtcacta--attatatcactggttaataagattcacattttaaactgaagcatatgctatgattgt-tatccaatct--atagtttgattgggtatttttaactaacatgcttacacatt-tattattatccatcaatctgcag

upper sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G45900.1 (Arabidopsis thaliana), 5'ss of exon 7
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgt--tgatccctttaatctcacttcattcaa--aattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag
|||| | || |||||||||||||||||||| || |||||| | || |||||||| |||||  | ||| | ||  | ||||||||||| ||||| || |||||    | | || |    | | ||| |   |    || |||   |   ||      ||||||   |    | |||     | ||| |                                                                                               
CCTTAGCGAGTTGATTGAATCTCATGATGCGGTGTTCTTGTTAACCGATACAAGAGAAAGCAGGTGGTTACCGTCTCTTCTTTGTGCTAATGCCAATAAGgtaactaactctgtttctttatttcttcttactggttatataagtataacaatctgcttgatatgtcggtgtttgatgtgaatttcag----------------------------------------------------------------------------------------------

upper sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ31414 (Selaginella moellendorffii), 5'ss of exon 10
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttgatccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag
          ||||| ||    ||||| |   ||||| |  | || ||||||||||||||||| |||||||||||  || | |||||    ||| |  |   | |    | |    | || ||||||   ||| |  || |   || ||   | ||                                                                                                                          
------AACCTTGATAGAGGAACATGACGTTATTTTCCTTTTAACCGATACAAGGGAAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgtttacctcattctcgattatgattcta--accgccaccatggcag----------------------------------------------------------------------------------------------------------------------

upper sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ38728 (Selaginella moellendorffii), 5'ss of exon 10
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttgatccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag
          ||||| ||    ||||| |   ||||| |  | || ||||||||||||||||| |||||||||||  || | |||||    ||| |  |   | |    | |    | || ||||||   ||| |  |  |   || ||   | ||                                                                                                                          
------AAGCTTGATAGAGGAACATGACGTTATTTTCCTTTTAACCGATACAAGGGAAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgtttacctcattctcgattatgatccta--accgccaccatggcag----------------------------------------------------------------------------------------------------------------------