Sequence
atgc intronic sequence ATGC exonic sequenceTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 5'ss of exon 12
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctcta-tagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
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ATTCCTGTTTAGTGCATGGGCTTGTTCTGCTGTTGGCAGAACTGCACAAGAAGTTGTTAACGAGGTCAGGAGACAGTTTATTGAGAGGCCTGGCATTATGgtgagtacatgcatataattaagtttgtcatttttcttatgcctataaaagttaatgctaacttctaatataatgttatgcag---------------
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G075900_T01 (Zea mays), 5'ss of exon 12
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagt--atgattctctatagcatttttatggtttatcat---gaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
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ATTCCTGTTTAGTGCATGGGCTTGTTCAGCAGTTGGCAAAACTGCACAGGAAGTTGTTAATGAGGTCAGGAGACAATTTATCGAGAGGCCTGGTATTATGgtgagtgcatgattacc-atgaagttcttcagttttatgcttggaaaagctgatgctaacttgtaacaatatcatccag-----------------------
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G069410_T01 (Zea mays), 5'ss of exon 4
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatg-attctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
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ATTCCTGTTCAGTGCATGGGCTTGCTCAGCAGTTGGCAAAACTGCACAGGAAGTTGTTAAAGAGGTCAGGAGACAATTTATTGAGAGGCCTGGTATCATGgtgagtacatgattaccatgaagttcttcagtccttttatgcttggaaaagcagatgctaacatgtaaca--atatcatccag---------------
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G24120.1 (Glycine max), 5'ss of exon 11
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
|| | |||||||| ||||| |||||||| |||||| | ||||| ||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||||||| || | | || || | | || ||| ||| |||| ||||| || || | | | || | | |||| ||||
ATTTGTTTTTAGTGCTTGGGCCTGTTCTGCTGTTGGCAGAACTGCACAAGAAGTTGTTAACGAAGTGAGAAGGCAGTTCATTGAGAGGCCTGGTATAATGgtgagtttgggtttgtaaagtaat----------attatgtatgacagtttcgatttt-gatgaccgctttttttcctgtttatacttttg--acag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G24120.2 (Glycine max), 5'ss of exon 12
--------TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
|| | |||||||| ||||| |||||||| |||||| | ||||| ||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||||||| || | | || || | | || ||| ||| |||| ||||| || || | | | || | | |||| ||||
ATGCTTATATTTGTTTTTAGTGCTTGGGCCTGTTCTGCTGTTGGCAGAACTGCACAAGAAGTTGTTAACGAAGTGAGAAGGCAGTTCATTGAGAGGCCTGgtataatggtgagtttgggtttgtaaagtaat----------attatgtatgacagtttcgatttt-gatgaccgctttttttcctgtttatacttttg--acag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 12
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
|| | |||||||| ||||| ||| |||| |||||| | ||||| ||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||||||| || | | || || | | ||||| | | || | |||||||| || || | | || | ||| || ||||
ATTTGTTTTTAGTGCTTGGGCCTGTGCTGCTGTTGGCAGAACTGCACAAGAAGTTGTTAACGAAGTGAGAAGGCAGTTCATTGAGAGGCCTGGTATAATGgtgagtttgggtttgtaaagtaatattatg-tatgcca---gtttaggttttgatcttctctctttt-------tttcccttttatgcttttgacag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 5'ss of exon 12
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
|||||| |||||||| |||||||| | |||||||| || ||||| |||||||||||||| ||||||||||| || |||||||||||||| || || |||||||| || || || | | | | || || || | | || || | || |||| || | || | ||
TTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTGCACAAGAGGTTGTCAACGAAGTAAGAAGGCAATTTATTGAGAGGCCTGGCATAATGgtgagcatatttttccttttgagtgcttcaccttttcttgtgtattggcttgtaccgttg-ttgactagcaaatatcttgttgcag-----------
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
||||| ||||| || ||||| ||| | |||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||| || || ||||| | | | |||| || ||||| ||||| ||||| | | || | |||| | | | || ||||
ATTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAACGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGgtaaatgtaattccgctggagtccgttcccttttat------------ttttatttttt--tcatcgggtg---tctttttgaactttatgtcacag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S28_200V6.1 (Physcomitrella patens), 5'ss of exon 13
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtat-------------gattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag-----------------------------------
|| | || ||||| ||||||||| |||| || ||||| || ||||| |||||||||| ||||| | || |||||| ||| |||| ||||||||||||||||| ||| || || | | | | ||||| ||| || || || ||||| | | | | || | | |||| |
TTATTTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACCGCTCAGGAGGTTGTCAGCGAAGTCCGGAGGCAGTTTGCTGAACGGCCTGGTATCATGgtgagtattcttttgagaatagatgcttcatggagtggtcacggtttggaatgcttgggaaattcaagatttaactaactactacatctgatctggagcttttgtggatgcttgcttttgataaaaatcttggtgcgaattgcag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S105_42V6.2 (Physcomitrella patens), 5'ss of exon 13
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtat----gattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag--------------------------------------------------------------------------
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TTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAGCTCAAGAAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATGgtaaggattcacgagtttacaaatgcctcttccagtgcacttcagttgtaatgcttaggaacttaaggttggat--attttctttaaaatggtcttttgaatattaacattggtagtagtactattaacggtatcaatctttttgtactgatagcaaatctggtgcgacttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188469|gb|CF607818.1|CF607818EST: AGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATG GACTATAAAGAGAAACCAGACTATGGTCGTTGTGTTGCCATTGTAGCATCT
genomic: AGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatga ... tttgctacagGACTATAAAGAGAAACCAGACTATGGTCGTTGTGTTGCCATTGTAGCATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtatgattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG