1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAGTGTTCCTGTTGCTGGCTGCTCCTGTATGTGGTTTGGCTGGAGTCTGGACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaatttctgctgatgtagaagtaatatcaactgcttaccttaataattgagttgatgagataagagggggtctactgttttggaatatgtggca...
species | Vitis vinifera |
transcript | Vv08s0058g00510.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGATEST: gi|32267493|gb|CD716456.1|CD716456
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGATEST: gi|32271344|gb|CD720503.1|CD720503
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGATEST: gi|30327458|gb|CD010720.1|CD010720
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGATEST: gi|32248530|gb|CD714349.1|CD714349
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGATEST: gi|161714495|gb|FC064464.1|FC064464
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCA-GTCTGAGATEST: gi|32269980|gb|CD719139.1|CD719139
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGATEST: gi|32248555|gb|CD714374.1|CD714374
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
EST: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAG GTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
genomic: ACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaat ... tacattttagGTTGAGCACTAAAAGTGGGCCATGGAAAATGATCTGGTCCAAGTCTGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGTTCCTGTTGCTGGCTGCTCCTGTATGTGGTTTGGCTGGAGTCTGGACTGGGTTGTTTCTCTTCATGACCTTGCGTGTTGTAGCTGGCATTTGGAGgtagactaatttctgctgatgtagaagtaatatcaactgcttaccttaataattgagttgatgagataagagggggtctactgttttggaatatgtggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaga