Sequence
atgc intronic sequence ATGC exonic sequenceAAGGCGCTTCAGCCCCCAGATCCTCTATCTGTTCAAAATGCAGTTGAACTTCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaagattggatttttgtgatttctagctttatgcctttataatcttaccctttttttgggtgaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G399212_T01 (Zea mays), 5'ss of exon 14
AAGGCGCTTCAGCCCCCAGATCCTCTATCTGTTCAAAATGCAGTTGAACTTCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaagattggatttttgtgatttctagctttatgcctttataatcttaccct--ttttttgggtgaatacag------------------------
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AAGTCACTGCAGCCACCAGATCCACTTTCTGTTAAGAATGCTATTGAGCTTCTTAAAACCATTGGCGCACTGGATGATATGGAGGAGCTCACTTCTCTTGgtgtgaaattttccagct----aacctccatataagtttttttgcacatttattccagttgtttgcataaacctctcaaatctactttggttttgtgcag
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 14
AAGGCGCTTCAGCCCCCAGATCCTCTATCTGTTCAAAATGCAGTTGAACTTCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaagattggatttttgtgatttct-agctttatgcctttataatcttaccctttttttggg--tgaatacag-------------
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AAGGCACTTCAGCCACCAGATCCTTTAGCTGTTAAGAATGCTATTGAACTTCTCAAAACAATTGGGGCGTTAGATGAACAGGAGGAGCTCACTCCACTGGgtatattatgctgaatatgtttgtctccttaagctattgagtttagatttttggatgttatctgaggctgagctaatttgatacttgcag
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 15
AAGGCGCTTCAGCCCCCAGATCCTCTATCTGTTCAAAATGCAGTTGAACTTCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaagattggatttttgtgatttct-agctttatgcctttataatcttaccctttttttgggtgaatacag--------------
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AAGGCACTTCAGCCACCAGATCCTTTAGCTGTTAAGAATGCTATTGAACTTCTCAAAACAATTGGGGCGTTAGATGAACAGGAAGAGCTCACTCCACTTGgtatattatgctggatatgtttgtctccttaagctattgagtttagatttttagatctatctgaggctgagctaattttatacttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185170|gb|CF604523.1|CF604523EST: TCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTG GCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCC
genomic: TCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaaga ... gtgaatacagGCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGCGCTTCAGCCCCCAGATCCTCTATCTGTTCAAAATGCAGTTGAACTTCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaagattggatttttgtgatttctagctttatgcctttataatcttaccctttttttgggtgaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT