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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGATAAATTTACAGAAAGCTTTATTTGAACTTGAGGAAACTAACCTTCGAAACCGCACTGAACTTCAGCATCTTGATGATGCTATTGCAAAACAACAGgtacgagagggctagttttactatggagtttcatttataatgactgcaatttgtgttcattattgccttcacttattctttaatgtgcttggaccatttc...

Basic information

species Vitis vinifera
transcript Vv07s0205g00140.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os03g56260.1 (Oryza sativa), 5'ss of exon 12
ACGGATAAATTTACAGAAAGCTTTATTTGAACTTGAGGAAACTAACCTTCGAAACCGCACTGAACTTCAGCATCTTGATGATGCTATTGCAAAACAACAGgtacgagagggctagttttactatggagtttcatttataatgactgcaatttgtgttcatta-ttgccttcacttattctttaat--gtgcttggaccatttc
||| || ||| | ||||||||  | ||||||||||| ||||| ||    || || || |  || || ||||||||||||||||| ||||||| |||||||||     |     |  | | |  |    |  ||  |  ||  ||| |  ||| |   || |    || | ||    |  |  |||  |  ||      | | |
ACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAACAGgttgattac--tcacctattcagtttgttgacaactcaaaaaactactcttt-tacacactggcagcttacaagcctcttccaatcagaactctagttaatac

upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM5G837018_T02 (Zea mays), 5'ss of exon 12
ACGGATAAATTTACAGAAAGCTTTATTTGAACTTGAGGAAACTAACCTTCGAAACCGCACTGAACTTCAGCATCTTGATGATGCTATTGCAAAACAACAGgtacgagagggctagttttactatggagtttcatttataatgactgcaatttgtgttcattattgccttca----cttattctt--taatgtgcttggaccatttc-
||| |||||| | ||||| ||| | |||||||| || ||||| ||    ||||||||||  ||||| ||||||||||||||| |||||||||  || |||||  | ||     ||||| |  |   | |   |||    |  |||      ||     |  | | |||  |      || ||     ||  |  |||||   ||   
ACGCATAAATCTTCAGAAGGCTCTGTTTGAACTCGAAGAAACCAATAAGCGAAACCGCATGGAACTCCAGCATCTTGATGATTCTATTGCAAGGCATCAGgttggtga---tcagtttcaa-acacattcctattctgcagaacttag---tgcaccaaaaagtacctctaatgttctactcccaacaacctctttggagacttctc

upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT3G49650.1 (Arabidopsis thaliana), 5'ss of exon 11
---ACGGATAAATTTACAGAAAGCTTTATTTGAACTTGAGGAAACTAACCTTCGAAACCGCACTGAACTTCAGCATCTTGATGATGCTATTGCAAAACAACAGgtacgagagggctagttttactatggagtttcatttata--atgactgcaatttgtgttcattattgccttcacttattctttaatgtgcttggaccatttc
    || ||||| |||||||| || |||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||||||| ||||| |||||        |  |  |||  |  || |   ||| |  || | |   || |||| ||  | |  |   | ||                                    
AGACCGTATAAACTTACAGAAGGCGTTATTTGAGCTTGAGGAAACTAACCTCAGAAATCGCACTGAACTTCAGCATCTTGATGATGCAATTGCGAAACAGgttagctgctaaagcttctcctaattcagaggtcaatatgttgcattactgtaacctcttctttgttttatag--------------------------------