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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaattgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02240.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 11
AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaa-ttgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag
||||||||||| ||||||||| || ||||||||||||||||||| ||  |  |||||| ||  | ||||  ||  |   | |||   ||| | |  |   | ||| ||           ||||     | ||||| ||  | |     
AATGCGTTCCAAATAACATATATCTTGTGGATATGGgtaatgaagttcattacactatctt-gactattggctaatg--tgttttagttgtctatattcctgaataat-----------aaaagaacaattttttatttgcag-----

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA16G21510.1 (Glycine max), 5'ss of exon 12
AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaattgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag
||||||||||| |||||||||||| |||||||||||||| |||      | |  |  | | || || |  ||||||||    | | || | |      ||     |||||  |    ||||    |||||  ||| |   | |||||
AATGCGTTCCAAATAACATATTTCTTGTGGATATGGgtactga------caccttgctcttaaataatgtctttttgtagcatatgttaatc------ttggtaaatggctgaatgataaa----tgaatgatttcttgatttgcag

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 8
AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaattgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag
||||||||||| |||||||||||| |||||||||||||| |||       || |||||| ||  |  | |  ||   |  | ||| ||      |||| |  ||  |||  || | |||| ||  |||||  ||| |   | | |||
AATGCGTTCCAAATAACATATTTCTTGTGGATATGGgtactga-------ccgctatttgcacct--tgatcttaaataatgtctttttctggcctatatagatcttggtaaatggctaataa-atgaatggtttcttgatttccag

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G09270.1 (Glycine max), 5'ss of exon 12
AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaattgttcccactattttcaattattaactttttgttt-tttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag
|| || ||||| ||||||||| || |||||||||||||||||||  |||   |  | | ||  || ||  || |  |    | | | || |    |||| ||     ||   ||    |||||     | || || ||  | |     
AACGCATTCCAAATAACATATATCTTGTGGATATGGgtaatgaa--gtttataacactatct-ttcttggctataggccaatgtgtttttattgtctatatt---cctgaataa----taaaagaacaatttcttatttgcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688552|gb|EC920354.1|EC920354
EST:     AATGCGTTCCAGATAACATATTTCCTGTGGATATGG                         TATTCTTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTAT
genomic: AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaatt ... acctgtgcagTATTCTTTT-GGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTAT
EST: gi|122689026|gb|EC930382.1|EC930382
EST:     AATGCGTTCCAGATAACATATTTCCTGTGGATATGG                         TATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATC
genomic: AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaatt ... acctgtgcagTATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATC