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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAACTCGGTGCTCTATCAACTTCTCCTTGATCCTAGTGAAAGAGTCTGTTTTGAGGCAATCTTATGTGTATTGGGAAAATTTGATAACGCAGAGCGgtactaatttgtgtcatcttcaattctctttcttaaatttatgaatttatggcatttgaaagttatcattctgtttcacatctgttcccataatatttaactggtcaatttctcttaaatctattcactacag

Basic information

species Vitis vinifera
transcript Vv07s0031g02090.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 11
AGTTCAACTCGGTGCTCTATCAACTTCTCCTTGATCCTAGTGAAAGAGTCTGTTTTGAGGCAATCTTATGTGTATTGGGAAAATTTGATAACGCAGAGCGgtactaatttgtgtcatcttcaattctctttcttaaatttatga----atttatggcatt-----tgaaagttat-cattctgtttcacatctgttcccataatatttaac----tggtcaatttctcttaaatctattcac---tacag-------
||||||| || |||||||||||||||||  | |||||||||||||||||||||||||||||||| || |||||| | ||||||| ||||||| | ||| ||| |   ||| |||| | |   |||    |   ||   |  | |    |||| |  | ||     |  | |||||  |   |  || | |  |  |    ||| |||        || |  ||||   |  |||||  |||    ||||        
AGTTCAATTCAGTGCTCTATCAACTTCTATTGGATCCTAGTGAAAGAGTCTGTTTTGAGGCAATTTTGTGTGTACTAGGAAAATATGATAACACTGAGAGgtgc-ggtttatgtcttataatattagtctctataccctcctaatcatatttttaactttgattgtctaggttatataaatttcttgaaagttactttgttaacattctgtcttgtgattgatttggatgtaatcttatcatgtttacacattctag

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 11
AGTTCAACTCGGTGCTCTATCAACTTCTCCTTGATCCTAGTGAAAGAGTCTGTTTTGAGGCAATCTTATGTGTATTGGGAAAATTTGATAACGCAGAGCGgtactaatt-tgtgtcatcttca-attctctttcttaaatttatgaatttatggcatttgaaagttatcattct----gtttcacatctgttcccataatatttaactggtcaat--ttctcttaaatctattc--actacag-------------
||||||| || ||||||||||| |||||  | |||||||||||||||||||| ||||||||||| || || ||| | ||||||| |||||| || ||| |||     || ||| | ||  | | | ||||| |       | || |  || |    |||||  ||     || |    |||||      ||| | ||  ||     |||     |  ||   ||| || || ||  | ||                
AGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGGAAAATATGATAATGCTGAGAGgtgtggtttatgttttataataataatctctataccctgctaatcatatttttaactttgattgtctaggttttataagtttcttgaaagttactatgttaacattctgccttgtgattgggttagatgtaatcttattatgtttacacattctag