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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGCAAACTCCATTCCTAATATTAGCCGgtaggaagttgattatcgaaaacctgtgaaccttttccttctctttattcatgctttctctgttgcaaccag

Basic information

species Vitis vinifera
transcript Vv07s0031g01750.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G31850.1 (Glycine max), 5'ss of exon 12
TGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGCAAACTCCATTCCTAATATTAGCCGgtag-----gaagttgatta---------tcgaaaacctgtgaaccttttccttctctttattcatgctttctctgttgcaaccag
|||||||||||||||||||||||||||| |||||  |||||   ||||| ||  |  |||||||||| |||||| ||||| |||| |||||||||||| |||        ||| | |||          | | |||          ||||   | |||  ||| |   ||| |||  || || |||
TGAGTGAATCTATCAGATATGCTTCTGGGGATCCCGTTGAAAGCTGGCTTAACTCTCTACTTTGCTTAGATGTTTCAAACGCCATCCCTAATATTAGCAGgttatatcaaaagcttatttcatatttccttggaaaatgagaccatttttgtctatctccatttactgtttttctcctgaaatcag

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G15130.1 (Glycine max), 5'ss of exon 12
TGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGCAAACTCCATTCCTAATATTAGCCGgt---aggaagttgattatcgaaaacctgtga-------accttttc--cttctctttattcatgctttctctgttgcaaccag
|||||||||| ||||||||||||||||| ||||| ||||||   ||||| ||  |  |||||||||| |||| | ||||| |||| |||||||||||| |||   |  ||| | |||    |   |||  ||       ||| |||     | |||  | | |   ||| | |  || || |||
TGAGTGAATCCATCAGATATGCTTCTGGGGATCCCATTGAAAGCTGGCTTAACTCTCTACTTTGCTTAGATGCTTCAAACACCATCCCTAATATTAGCAGgttatatcaagcttatttcatatttccttggacaatgagaccattttagtctatctccacttactgtttttgtcctgaaatcag