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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAGgtaacataatgttcaaatatggtgctgtttcgggcttggtatctctagctgctgaataatgctttttcattcttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00320.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA01G39490.1 (Glycine max), 5'ss of exon 16
GTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAGgtaacataatgttcaaatatggtgctgtttcgggcttggtatctctagctgctgaataatgctttttcattcttcag
||||| ||||| ||||||||| |||| ||||||||||| ||||||||||||    | |  | ||  ||  |      | | || | || | ||   ||||| |||      | ||||  || |||
GTTCTTCTTGGAAGGTCTGATATATCAGGTTGGGGAGCCTTCTTAAAGgtatt-cactaataaatgatcctatatggttgtgcgttgtttttccttctgct-aatgcaatctgttcaccctccag

upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 16
GTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAGgtaacataatgttca-aatatggtgctgtttcgggcttggtatctctagctgctgaataatgctttttcattcttcag
||||| ||||| |||||||||||||| || |||||||| ||||||||||||   |   ||  |  ||    |   |||  |  ||  || | ||    |||| |||      | ||||  || |||
GTTCTTCTTGGAAGGTCTGATGTATCCGGCTGGGGAGCCTTCTTAAAGgtattctccagtaaatgatcctatatggttatgcact--gtttttccttttgct-aatgcaatctgttcaccctccag

upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT2G23380.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAGgtaacataatgttcaaatatggt-----------gctgtttcgggcttggt--atctctag---------ctgct----gaataatgctttttcattctt-cag
||| | ||||| |  |||||||| |||||||||||||| ||||||||||||  || | |||||||  | ||           |   ||    | ||  |  || | |||          |||     ||| |||  |||||| ||||| |||
GTTTTACTTGGAATATCTGATGTTTCTGGTTGGGGAGCTTTCTTAAAGgta-tattaggttcaaaatttgttaaactgataagtccttcaaagattaatctatgtttagagtatgaacttgccttaagaacaattatttttccttcttacag