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TTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTCAGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagtttctatgtttgttcttctctgtgaggggaatcggattgaagaaaattatagattctaatatgttttggttggagttcattcattctctgg...
species | Vitis vinifera |
transcript | Vv07s0005g05030.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAG TACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATEST: gi|349827765|gb|FQ422633.1|FQ422633
genomic: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagt ... atttatgcagTACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGAT
EST: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAG TACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATEST: gi|351056897|gb|FQ443524.1|FQ443524
genomic: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagt ... atttatgcagTACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGAT
EST: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAG TACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATEST: gi|351024484|gb|FQ426293.1|FQ426293
genomic: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagt ... atttatgcagTACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGAT
EST: AGCAATTAATTGAAGCTTCTGTGGCTGACGATCAAGCCATTTGGACCAAG TACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATEST: gi|351046710|gb|FQ453326.1|FQ453326
genomic: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagt ... atttatgcagTACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGAT
EST: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAG TACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGAT
genomic: AGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagt ... atttatgcagTACTTCAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTCAGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCAAGgtatgtcagtttctatgtttgttcttctctgtgaggggaatcggattgaagaaaattatagattctaatatgttttggttggagttcattcattctctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa